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Clostridium perfringens str. 13 (cper0)
Gene : CPE0438
DDBJ      :CPE0438      probable ion-uptake ABC transporter
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  359/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:350 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   43->350 2pt2A PDBj 5e-64 38.0 %
:RPS:PDB   43->350 1d9yA PDBj 6e-36 21.7 %
:RPS:SCOP  43->349 1q35A  c.94.1.1 * 1e-77 38.0 %
:HMM:SCOP  38->347 1xvxA_ c.94.1.1 * 6.1e-74 32.1 %
:HMM:PFM   51->296 PF01547 * SBP_bac_1 5.2e-22 24.8 242/314  
:BLT:SWISS 27->350 IDIA_THEEB 1e-66 37.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80144.1 GT:GENE CPE0438 GT:PRODUCT probable ion-uptake ABC transporter GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 558636..559688 GB:FROM 558636 GB:TO 559688 GB:DIRECTION + GB:GENE CPE0438 GB:PRODUCT probable ion-uptake ABC transporter GB:NOTE 350 aa, similar to pir:S74691 iron transport protein from Synechocystis sp. (strain PCC 6803) (360 aa); 37% identity in 338 aa overlap iron-binding protein GB:PROTEIN_ID BAB80144.1 LENGTH 350 SQ:AASEQ MLKRKKLLALTLTALVSMGVLAGCGQKNQEAKGEETGSGEKIVNVYSSRHYDIDKQLFKDFESDTGIKVNLVDGKSDELIERMAREGDNTSADVFLTVGAENIAQLNEKDLIKDISSEKINENIPSEYRGKNWVGLTSRARIIVYNKEKVNPETIKTYNDLTKNEFKGKVLTRSSSSSYNNALLSSFIQLDGADKAKEWAQGIVNNFARTPEGNDRDQAKAIMAGIGDVGIMNSYYIAKMISSSDAEEAKVGKEIGVLFPENTHLNLSFGAVTKNAKNEENAVALLEYLTEEKAQKAYVDENGEFALNTKVGKSELQKSWGDFTVQNLNYETLGESKQEATLIFDQVGWK GT:EXON 1|1-350:0| BL:SWS:NREP 1 BL:SWS:REP 27->350|IDIA_THEEB|1e-66|37.5|323/355| SEG 2->15|lkrkkllaltltal| SEG 174->186|sssssynnallss| BL:PDB:NREP 1 BL:PDB:REP 43->350|2pt2A|5e-64|38.0|308/316| RP:PDB:NREP 1 RP:PDB:REP 43->350|1d9yA|6e-36|21.7|304/309| HM:PFM:NREP 1 HM:PFM:REP 51->296|PF01547|5.2e-22|24.8|242/314|SBP_bac_1| RP:SCP:NREP 1 RP:SCP:REP 43->349|1q35A|1e-77|38.0|303/317|c.94.1.1| HM:SCP:REP 38->347|1xvxA_|6.1e-74|32.1|302/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 424 OP:NHOMOORG 364 OP:PATTERN ----------------------------1--1-----1--1--------------------------- ----1----------------2---1------1112--31--11--------111-1---1-1------1------------1-------------------------1---------------------------11111---11111122111221111121211-1-11111111111111--11------22222222122222221----222------1------21---------------------------------------------------11---1----------------------------------1---1111111111-2--111-111--2-------1---1----------------------------11111111111111111-11111111111-13311111111111-111111111111---------------11111111111---------------11111-----11111111111-1111111-1111112-21-1------111111111111111---1111111111-111211--1-1---1-----------1-----1---1--1-111111-------------1--111-1-1111112111-1111111111111----111--------111---------------------------------1133-------------------1---------111111111111---1----------1212-1--1--11111111-------1111122212332-22221111----------11111111111121--------------11-2---------------------------------------------1--------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 321 STR:RPRED 91.7 SQ:SECSTR ############################cccTTc#ccTTccEEEEEEcccHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHGGGccccEEEEccHHHHHHHHHTTccccccTTHHHHTccTTccccTcEEEEEEEEEEEEETTTcGGGccccGGGGccGGGTTTEEEcTTTcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcEEcccccHHHHHHHHHTTcccEEEEETHHHHHHHHHHcGGGccEEEEcccTTcGGGcEEEEEEEEcTTcccHHHHHHHHHHHHcHHHHHHHHHHcccEEccTTcccccccccHHHHTccccccccHHHHHHHHHHHHHHHTcc DISOP:02AL 1-8, 30-35| PSIPRED cccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHcccccHHHHHHHccHHccccEEEEEEEcEEEEEEEHHcccccccccHHHHHcHHHccEEEEccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccEEEEEcHHHHHHHHHcHHHHHHcccccEEEEccccEEEEEEEEEEcccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHcccHHcccccccHHHHHHHHHHHHHHHHHHccc //