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Clostridium perfringens str. 13 (cper0)
Gene : CPE0439
DDBJ      :CPE0439      probable iron-uptake ABC transporter
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  466/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:530 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   63->233 2onkC PDBj 1e-07 26.2 %
:BLT:PDB   296->499 2r6gG PDBj 1e-07 29.1 %
:RPS:PDB   167->201 3dhwA PDBj 9e-09 31.4 %
:RPS:SCOP  63->262 2r6gG1  f.58.1.1 * 4e-14 12.9 %
:RPS:SCOP  321->528 2r6gG1  f.58.1.1 * 1e-11 17.1 %
:RPS:PFM   63->217 PF00528 * BPD_transp_1 2e-06 28.0 %
:HMM:PFM   69->254 PF00528 * BPD_transp_1 8.8e-13 22.0 159/185  
:HMM:PFM   342->528 PF00528 * BPD_transp_1 1.3e-14 19.1 178/185  
:BLT:SWISS 65->528 FBPB2_HAEIN 2e-37 28.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80145.1 GT:GENE CPE0439 GT:PRODUCT probable iron-uptake ABC transporter GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 559688..561280 GB:FROM 559688 GB:TO 561280 GB:DIRECTION + GB:GENE CPE0439 GB:PRODUCT probable iron-uptake ABC transporter GB:NOTE 530 aa, similar to pir:E81435 probable iron-uptake ABC transport system permease protein Cj0174c from Campylobacter jejuni (strain NCTC 11168) (538 aa); 34.6% identity in 529 aa overlap. Putative N-terminal signal sequence and 10 putative transmembrane regions were found by PSORT. permease GB:PROTEIN_ID BAB80145.1 LENGTH 530 SQ:AASEQ MKKIKFNGWALLSTIISLMIVLPNIDIIIHLFQKPNKTWYHIKEYLLKDYIVTSIIVVFFTVLLSIIIGVTLSWFISAYDFPFRKFFRWALILPLAIPPYIGAYTYSGMVSYTGVIQRFFRNILGVELNQKYFDIMSIEGAIFIFTLFLFPYVYMVTMTFLEKQSAGLIESARLLGSSAIGIFFRVIIPVSRGAIVAGSTLIALEVLSDYGVVSYLGVQTFSTAIFKSWISLGDVDSAIRLAGILMVVVFIIISSEKALRGRKKYSFTNTKVRPIKRKNLKGFSKAIVTVYVLIIFSLGFLIPVLQMIAWAIASYKNIYYSQFLSMIFNSVILASGCSLLIVIMALIVANYVRTRSGLLSKIYAKVTLIGYSIPGAVVAITMILFFVDIDNKIKGLALSTSIIMLVFAYVIRFLAIGYQNIEGGFEKIGNKFTEASRTLGYGVTKTFFKVDIHMLKPAILGAFALTFVDIIKELPLVLTLRPFNFYTLSTKVFEYANDEMIPESAIPSLIIVFVSFVAIYFLYKVADKED GT:EXON 1|1-530:0| BL:SWS:NREP 1 BL:SWS:REP 65->528|FBPB2_HAEIN|2e-37|28.0|436/506| TM:NTM 13 TM:REGION 9->31| TM:REGION 53->75| TM:REGION 86->106| TM:REGION 137->159| TM:REGION 176->198| TM:REGION 210->232| TM:REGION 238->259| TM:REGION 288->310| TM:REGION 326->348| TM:REGION 366->388| TM:REGION 397->419| TM:REGION 455->477| TM:REGION 502->524| SEG 51->62|ivtsiivvfftv| BL:PDB:NREP 2 BL:PDB:REP 63->233|2onkC|1e-07|26.2|160/252| BL:PDB:REP 296->499|2r6gG|1e-07|29.1|199/284| RP:PDB:NREP 1 RP:PDB:REP 167->201|3dhwA|9e-09|31.4|35/203| RP:PFM:NREP 1 RP:PFM:REP 63->217|PF00528|2e-06|28.0|143/195|BPD_transp_1| HM:PFM:NREP 2 HM:PFM:REP 69->254|PF00528|8.8e-13|22.0|159/185|BPD_transp_1| HM:PFM:REP 342->528|PF00528|1.3e-14|19.1|178/185|BPD_transp_1| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 2 RP:SCP:REP 63->262|2r6gG1|4e-14|12.9|186/284|f.58.1.1| RP:SCP:REP 321->528|2r6gG1|1e-11|17.1|206/284|f.58.1.1| OP:NHOMO 820 OP:NHOMOORG 489 OP:PATTERN 111-1-----------2-------11111111-----2121-----1----------3212------- ----1----------------1---1------1111--32--12--1-----1-1-------------1---------122-1----1--------------------1-------------------1--11---11111--111112111211111111111111-1-11111111111111--11------21212322122232221----223--131-1------41---------------1---12----------11------------------------112---1---------------------------1--1--------1--111-12-112-1412---11112-1-------21------1-----1------31222144664665664-11111121511-35512411135411-111152122421---------------11111111111---------------11111-----25432111322-111133121111114-1112------122223121112321---1112222221-1112--1-1-2---3112-11----11-----12-13--1-111111-----------1----11111-2112211111-1111111212111----111------21531412222222222-2222221222222222222112671111111121111111111222222221-333333333333---1----------1213111534112-1211311111-11123222112543123231222----------11132222222232--------------111211--11--------1---------------------------1-----1------ ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 388 STR:RPRED 73.2 SQ:SECSTR ##############################################################HHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHcTTcTTTTTcccTTTGGGccccTTcHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHccHHHHTTcccccHHHHHHHHHHHc##TTTTHHHHHHHHHHHHHH##########################################cccccccc##cccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH#HHHHHcccTTcHHHHHHHHTTccccccHHHHHHHHHHHHHHHcTTccTTcHH#HHHHHH#TTTTHHHHHHHHHHHTTccTHHHHHHHHTTccHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTccHHHHHcccGGGccHHHHGGGGcccc############################### DISOP:02AL 260-280, 529-530| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccc //