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Clostridium perfringens str. 13 (cper0)
Gene : CPE0463
DDBJ      :CPE0463      capsular polysaccharide biosynthesis protein
Swiss-Prot:             

Homologs  Archaea  44/68 : Bacteria  580/915 : Eukaryota  92/199 : Viruses  2/175   --->[See Alignment]
c.2.1e.26.1
:637 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   151->269 2z2vB PDBj 5e-04 27.0 %
:BLT:PDB   284->576 2gn4A PDBj 9e-40 35.1 %
:RPS:PDB   151->265 3e1kC PDBj 1e-04 8.0 %
:RPS:PDB   254->426 1ds6B PDBj 1e-25 9.7 %
:RPS:PDB   451->597 3d5bZ PDBj 2e-31 12.8 %
:RPS:SCOP  151->223 1xcbA2  c.2.1.12 * 7e-04 20.3 %
:RPS:SCOP  215->557 1e1dA  e.26.1.1 * 2e-35 13.5 %
:HMM:SCOP  147->281 1xcbA2 c.2.1.12 * 1.1e-21 31.0 %
:HMM:SCOP  289->616 1gy8A_ c.2.1.2 * 1.1e-56 31.6 %
:RPS:PFM   292->576 PF02719 * Polysacc_synt_2 e-107 67.0 %
:HMM:PFM   292->575 PF02719 * Polysacc_synt_2 3.6e-129 63.7 284/296  
:HMM:PFM   152->246 PF02254 * TrkA_N 4.2e-06 21.3 89/116  
:HMM:PFM   121->144 PF01479 * S4 0.00081 33.3 24/48  
:BLT:SWISS 12->584 EPSC_BACSU e-109 41.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80169.1 GT:GENE CPE0463 GT:PRODUCT capsular polysaccharide biosynthesis protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 583751..585664 GB:FROM 583751 GB:TO 585664 GB:DIRECTION + GB:GENE CPE0463 GB:PRODUCT capsular polysaccharide biosynthesis protein GB:NOTE 637 aa, similar to gp:AF155805_2 Cps9E from Streptococcus suis (608 aa); 43.4% identity in 588 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB80169.1 LENGTH 637 SQ:AASEQ MEKEGKVKALFLMSLDILIIVNSYILAFTIRFNFDFIMDKRNELILFLPVIVIIYLIMLSIFKMYKSIWTIVGIDEVAFGLIACLIATGIILITSTIISSIYYIDYITVLLAGLFIMIFTIGIRVSFRIYRRMISHGRVLLNSSNISNLEKILIIGAGSCGQLIIEEIRKQNPIKQKVIGVIDDNPSKIGTYLRGIKILGNRNKIIEISEEKNVDLILIAMPSVDGKTKKEIIEICQSTRAKVKIIPGMYELIGGKVSLNRMRDIDLRDLLGREEVILDKKGIKDYIENKVVMVTGGGGSIGSELCRQIAKFSPKLLLILDIYENNAYELENEIISNFKNLKEKVLIASVREEKRLENIFNEYKPQVIFHAAAHKHVPLMERNPEEAIKNNVIGTLNVAECAHKYGAERFVLISTDKAVNPTNVMGASKRMCEMIIQAIDKNSNTEFVAVRFGNVLGSNGSVIPLFKKQIAKGGPVTLTHKKITRYFMLIPEAAQLVLQAGAYAKGGEIFVLDMGNPVLIYDLAKDLIKLSGFEPEVDIKIEITGLRPGEKLYEELLMDEEGLRKTSHEKIFIAKPGEYDFEMLKLGVNALKKIADLGDVETLKTALQFIVKTYKRLDTENNSVFNEVALHEASEAI GT:EXON 1|1-637:0| BL:SWS:NREP 1 BL:SWS:REP 12->584|EPSC_BACSU|e-109|41.5|556/598| TM:NTM 4 TM:REGION 8->30| TM:REGION 42->64| TM:REGION 73->95| TM:REGION 106->128| SEG 90->108|iilitstiissiyyidyit| BL:PDB:NREP 2 BL:PDB:REP 151->269|2z2vB|5e-04|27.0|111/345| BL:PDB:REP 284->576|2gn4A|9e-40|35.1|279/329| RP:PDB:NREP 3 RP:PDB:REP 151->265|3e1kC|1e-04|8.0|112/393| RP:PDB:REP 254->426|1ds6B|1e-25|9.7|165/179| RP:PDB:REP 451->597|3d5bZ|2e-31|12.8|141/188| RP:PFM:NREP 1 RP:PFM:REP 292->576|PF02719|e-107|67.0|285/291|Polysacc_synt_2| HM:PFM:NREP 3 HM:PFM:REP 292->575|PF02719|3.6e-129|63.7|284/296|Polysacc_synt_2| HM:PFM:REP 152->246|PF02254|4.2e-06|21.3|89/116|TrkA_N| HM:PFM:REP 121->144|PF01479|0.00081|33.3|24/48|S4| GO:PFM:NREP 1 GO:PFM GO:0009058|"GO:biosynthetic process"|PF02719|IPR003869| RP:SCP:NREP 2 RP:SCP:REP 151->223|1xcbA2|7e-04|20.3|69/126|c.2.1.12| RP:SCP:REP 215->557|1e1dA|2e-35|13.5|318/553|e.26.1.1| HM:SCP:REP 147->281|1xcbA2|1.1e-21|31.0|126/0|c.2.1.12|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 289->616|1gy8A_|1.1e-56|31.6|294/383|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1309 OP:NHOMOORG 718 OP:PATTERN 11--1-111221221--2-11--12--2----34212213123-2--4-111-11211121---2--4 -22-1--111-------------------------------111---2---1---1-211--1--1-1--1-111----22-1134449654-8-----22123122113--------------1----11-123-12244-----2121--11---11-1-112--11511112114-22-31111121--14-----33--13-231122223-1521-1223------232222222221222212--21-11-----312------11-111----------1--32223232224-------------1--11----23113455554644531244322132711-22222243152331--2222--4-3332------111252-1121211111111111-21121211111-1---14232321--2231-21111-1-1111111111111213------------1111111111111-----1-11-111132112111111122231111111121111--2-11112--211122321111122233332121512222311111231--13331315221-213-342233322231211121222113211--32-33-3421223-233-121212221323---3511------1-12------2-121--------21----1------------21122222222221222211------1-----------------------1111212-4-1-111--1--11-2111-1111211111212222212331122222222222-35421111114124111111111112221-11222255-------1312------------1------------2142232332-1- ----1-1-11--2621111--1-111--------------------11--1312111121111------1--1-----------1-------1----------11--13----21-211--11111-1-111-111-1--1--1111---1--1-1111----1-----16223----1D312--53261613213233 -----------------------1--------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 476 STR:RPRED 74.7 SQ:SECSTR ######################################################################################################################################################EEEEGGTccccGGGHHHHHTTccGGGcccHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHTTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHTTTTcEEEEcGGTcTTEEEEccccGGGHHHHHHHHcccEEEcccccccccTTcccGGGEEEETTHcccTTcEEEccccTTcccccHHHHHHHTTccccccccccEEEEcccHHHHHHTHHHHHHHHHHTcccccccEEEEccccHHHHHHHTEEEEEEEcTTccEEEEEEHHHHHHHHHHHTTTccEEEEcTccETccEEEEEcccETTTTEEEEEEEEEcccccEEEEEEEEEccccHHHHTTcccEEcccEEEEEEcTTccccccccEEEcTTcccTTccEEGGGccccccHHHHHHHHHHHHHTcccccccccc########### DISOP:02AL 1-4, 141-147, 633-637| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHccccccEEEEEEEccHHHHccEEccEEccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccEEEcccHHHHHcccccHHHcccccHHHHcccccccccHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHccccEEEccccEEEEEEEHHHHHHHHHHHHHccccccEEEEcccccEEHHHHHHHHHHHHcccccccccEEEccccccccccccccccHHccccccccccEEEccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHcc //