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Clostridium perfringens str. 13 (cper0)
Gene : CPE0476
DDBJ      :CPE0476      capsular polysaccharide biosynthesis protein
Swiss-Prot:             

Homologs  Archaea  41/68 : Bacteria  521/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
c.87.1
:368 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   178->367 2bisA PDBj 2e-14 27.7 %
:RPS:PDB   5->368 3c4qA PDBj 2e-40 14.0 %
:RPS:SCOP  5->363 2iv7A1  c.87.1.8 * 6e-37 12.9 %
:HMM:SCOP  1->368 2bisA1 c.87.1.8 * 1.5e-62 27.4 %
:RPS:PFM   188->342 PF00534 * Glycos_transf_1 3e-24 38.3 %
:HMM:PFM   180->343 PF00534 * Glycos_transf_1 8.1e-39 34.8 164/172  
:HMM:PFM   58->115 PF08288 * PIGA 9e-07 22.4 58/90  
:HMM:PFM   137->179 PF03015 * Sterile 0.00018 18.6 43/94  
:BLT:SWISS 161->367 CAPM_STAAU 1e-16 27.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80182.1 GT:GENE CPE0476 GT:PRODUCT capsular polysaccharide biosynthesis protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 595897..597003 GB:FROM 595897 GB:TO 597003 GB:DIRECTION + GB:GENE CPE0476 GB:PRODUCT capsular polysaccharide biosynthesis protein GB:NOTE 368 aa, similar to pir:F70441 capsular polysaccharide biosynthsis protein from Aquifex aeolicus (316 aa); 31.2% identity in 202 aa overlap GB:PROTEIN_ID BAB80182.1 LENGTH 368 SQ:AASEQ MKKCLHILPMNKLSGAEKMALLICKNMKKFTPVVVCGGKSLSEIFKKEGIESYDTTFSNKNIFKTLRFLKNIIEKNNIKIIHAHDNNASLNAYLVKRTFRLDIKVISHIHNCYPFLKGKNFNKLLDSYFRPRYDYNISCGSLVYEFYKKNTKYFRTDKTEVLSNAMDIKEINKFDFNKSKEIIEKFKIPKNKKILGFIGRLDEQKGINPFIKELSKYKEYFNDCTFLLVGSGSQEQEIKILIKELNLEEYFILTGFQEDTYKFYPIIDVFFLPSLYEGLPMVLLEAMAFKKTIVSMDVGSIGELINDKTGILIKKGDYKTFINSLKYIKDDENKVERYGEEASRFVRENYNIESYVEKIEKKYKSLIS GT:EXON 1|1-368:0| BL:SWS:NREP 1 BL:SWS:REP 161->367|CAPM_STAAU|1e-16|27.6|203/380| SEG 70->81|kniieknnikii| BL:PDB:NREP 1 BL:PDB:REP 178->367|2bisA|2e-14|27.7|188/440| RP:PDB:NREP 1 RP:PDB:REP 5->368|3c4qA|2e-40|14.0|363/393| RP:PFM:NREP 1 RP:PFM:REP 188->342|PF00534|3e-24|38.3|154/165|Glycos_transf_1| HM:PFM:NREP 3 HM:PFM:REP 180->343|PF00534|8.1e-39|34.8|164/172|Glycos_transf_1| HM:PFM:REP 58->115|PF08288|9e-07|22.4|58/90|PIGA| HM:PFM:REP 137->179|PF03015|0.00018|18.6|43/94|Sterile| GO:PFM:NREP 1 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00534|IPR001296| RP:SCP:NREP 1 RP:SCP:REP 5->363|2iv7A1|6e-37|12.9|356/370|c.87.1.8| HM:SCP:REP 1->368|2bisA1|1.5e-62|27.4|365/0|c.87.1.8|1/1|UDP-Glycosyltransferase/glycogen phosphorylase| OP:NHOMO 1315 OP:NHOMOORG 571 OP:PATTERN 11-----11------141----114--122--16522523324-52931357613913343------- 1-2--1-2---11--------1-----------------2------1-------------------11--13---1----3-13424576451612---71216334513---------------2352124143323367-116-E839564--11-22111231359D41121--113111-1---452-133343443322437522644324295133232------463112-22122111223321--1-2-11-12423--1-15---1-1-----------32222211111--------------112-1111-2--42333333313221334813135122335311635-63323122311245111-11111-11-1----1--111111111111-------1-11-1111121312122112---2-111121---------------1------------12222222222222----1----1----1---1---------2--------1--1-------21-----1---2--2112----1---1336225-3421534--23432322-41335---1214436535--1-23-1-------3521----11562523-1-------------1---11---6234------1111212111213111--12111111221112212221-1--4331-1-111111--1--13121111-2---------------1-22222-1115251112-----111111-13111233-13121--1-241-1----1--132322323-11442222222122----------------1-112222-111-1114-1---------1---------------4411242332-1- 1---1---1----------------------------------------------------------------------------------------------1-----------------------------------------------------------1----------1----------------1-1----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 368 STR:RPRED 100.0 SQ:SECSTR cEEETccTTcTTccHHHHHHHHHHHHHHHcEEEEEEEcccGGGccEEEEETTccGGGGGGGHHHHHHHHHHHHHHTTccccEEEEEHHHHHHHHHHHHHHHTccEEEEccccTTcccHHHHHHHHHHHHHHTTccEEEEccHHHHHHHHHHHcccTTcEEEccccccTTTcccccTTHHHHHHHHHTcccccEEEEEEccccGGGcHHHHHHHHHHHHHHcTTccEEEEEEccccHHHHHHHTTcGGGEEEEccccHHHHHHHHHHccEEEEccccccccHHHHHHHHTTccEEEEccTTHHHHcccTTEEEEccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHH DISOP:02AL 368-369| PSIPRED ccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHccEEEEccHHHHHHHHHHHccccHHHEEEEEccccHHHcccccccHHHHHHHHcccccccEEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHccccccEEEEcccccHHHHHHHccEEEEcccccccHHHHHHHHHccccEEEEccccHHHHcccccEEEEccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHc //