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Clostridium perfringens str. 13 (cper0)
Gene : CPE0488
DDBJ      :CPE0488      capsular polysaccharide biosynthsis protein
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  255/915 : Eukaryota  13/199 : Viruses  0/175   --->[See Alignment]
c.87.1
:388 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   256->375 2jjmA PDBj 1e-08 24.2 %
:RPS:PDB   3->368 3c48A PDBj 6e-28 13.5 %
:RPS:SCOP  211->360 2f9fA1  c.87.1.8 * 2e-26 28.9 %
:HMM:SCOP  1->373 2bisA1 c.87.1.8 * 8.3e-47 19.7 %
:RPS:PFM   222->367 PF00534 * Glycos_transf_1 3e-17 33.6 %
:HMM:PFM   218->368 PF00534 * Glycos_transf_1 4.5e-36 33.1 151/172  
:HMM:PFM   56->104 PF05172 * MPPN 0.00031 18.8 48/101  
:BLT:SWISS 173->369 Y1059_METJA 2e-19 31.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80194.1 GT:GENE CPE0488 GT:PRODUCT capsular polysaccharide biosynthsis protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 608456..609622 GB:FROM 608456 GB:TO 609622 GB:DIRECTION + GB:GENE CPE0488 GB:PRODUCT capsular polysaccharide biosynthsis protein GB:NOTE 388 aa, similar to pir:F70441 capsular polysaccharide biosynthsis protein from Aquifex aeolicus (316 aa); 31.3% identity in 179 aa overlap. 1 putative transmembrane region was found by PSORT GB:PROTEIN_ID BAB80194.1 LENGTH 388 SQ:AASEQ MKKIAIVTRCIIAGGIEKALISMINSIDRSKYKITIFVMAKGGEFEKFISGDIEIIPIYGYEKTTKEKIINNIKEGNIINAVKILFYTYIALNSRPGYEQEKYLAKILPKHKEVYDLAIAYHVPASFPVIYVINHLNARNKVGWIHSDATKYKKQIDKYYDYYKKFNKIYLVSKEGKEKFIGLYPDLSRKSEVFHNIISRDEIINLSQKGSGFRDKFKGIRILTVGRITHEKGHILIPEICKKLIDNKYNIRWYCIGDGDKRDELQEQINNYNLDNIVHLLGVKTNPYKYMKECDIYVQPSKEEGYCITIAEAKCLSKPIIFTNVTGAEEQIKHGKTGFIAEFDIDSIYKYLVKLIDDRELRDKLSENLTNEIVDTREEINKLYSILR GT:EXON 1|1-388:0| BL:SWS:NREP 1 BL:SWS:REP 173->369|Y1059_METJA|2e-19|31.0|197/406| SEG 62->80|ekttkekiinnikegniin| SEG 151->170|kykkqidkyydyykkfnkiy| BL:PDB:NREP 1 BL:PDB:REP 256->375|2jjmA|1e-08|24.2|120/359| RP:PDB:NREP 1 RP:PDB:REP 3->368|3c48A|6e-28|13.5|348/399| RP:PFM:NREP 1 RP:PFM:REP 222->367|PF00534|3e-17|33.6|143/165|Glycos_transf_1| HM:PFM:NREP 2 HM:PFM:REP 218->368|PF00534|4.5e-36|33.1|151/172|Glycos_transf_1| HM:PFM:REP 56->104|PF05172|0.00031|18.8|48/101|MPPN| GO:PFM:NREP 1 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00534|IPR001296| RP:SCP:NREP 1 RP:SCP:REP 211->360|2f9fA1|2e-26|28.9|149/166|c.87.1.8| HM:SCP:REP 1->373|2bisA1|8.3e-47|19.7|371/0|c.87.1.8|1/1|UDP-Glycosyltransferase/glycogen phosphorylase| OP:NHOMO 432 OP:NHOMOORG 295 OP:PATTERN 11---------------1-------11-11--11112-1--1212-5-11314------1-1--1--1 --1-------------------------------------------1-----------------------1---------1--21-12-1321111---5-111121221---------------31422-21332---13---3-4313342-------------1151---1-----1-11------1---1--1-1---1-1132--3112-2-42---22-1----115-112-21111111212-------1--1-----2-----1--1--------------11111111111----------------1-------1-13----------1---35121-4--2121-11431--1111-2131--22-11------------------1------------------1---1-1---------11-----------------------1--1-----------------1111----1--1---------1------------------2--------11---------2-------------1----1-----------12--2--1-11-1--11--1112212----1-1-32211111121---------21--1--1116--3-3----1-----------1---1----1-1----------2-2---1-1--------1----1----11-11-------------------------2-1-----------------------11111----1131111---------1--11--111----11---------------------------1111-----12-11--------------------1111-111-11-3---------------------------1-----121---- 1-11------1----1-------1--1-------------------------------------------------------------------------1--1---------------------------------------------------------1---------11-1------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 387 STR:RPRED 99.7 SQ:SECSTR #EEEEEEcTTcccccHHHHHHHHHHHHHHTTcEEEEEEEcccGGGccEEEEEETTEEEEEEcccccccccGGGGGGGHHHHHHHHHHHHHHHTcccEHHHHHHHHHHHHHHHTccEEEEccccHHHHcccccHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHHHHcEccHHHHHHHHHHHcccGGGEEEccccccTTTcccccHHHHHHTTccccEEEEEEccccGGGcHHHHHHHHHHHHHHcTTccEEEEEEcccccHHHHHHHHTTcTTTEEEEccccHHHHHHHHccEEEEccccccccHHHHHHHHTTccEEEEccTTHHHHcccTTTEEEEcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHc PSIPRED cEEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHcccccccEEEEcccccHHHccccccHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHccccccEEEEcccccHHHHHHHccEEEEccccccccHHHHHHHHccccEEEEcccccHHHHcccccEEEccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc //