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Clostridium perfringens str. 13 (cper0)
Gene : CPE0501
DDBJ      :CPE0501      capsular polysaccharide biosynthsis protein
Swiss-Prot:             

Homologs  Archaea  35/68 : Bacteria  578/915 : Eukaryota  23/199 : Viruses  0/175   --->[See Alignment]
c.68.1
:326 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->126 2z87B PDBj 2e-20 35.8 %
:RPS:PDB   1->207 3bcvA PDBj 4e-27 34.4 %
:RPS:SCOP  1->207 1omxA  c.68.1.15 * 4e-23 12.5 %
:HMM:SCOP  3->231 1qg8A_ c.68.1.1 * 6.4e-50 35.7 %
:RPS:PFM   5->126 PF00535 * Glycos_transf_2 6e-23 43.0 %
:HMM:PFM   5->149 PF00535 * Glycos_transf_2 9e-35 38.2 131/169  
:HMM:PFM   251->324 PF05408 * Peptidase_C28 6e-05 25.4 67/193  
:HMM:PFM   176->211 PF04176 * TIP41 0.00058 41.7 36/182  
:BLT:SWISS 4->262 EPSJ_BACSU 1e-33 38.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80207.1 GT:GENE CPE0501 GT:PRODUCT capsular polysaccharide biosynthsis protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 622784..623764 GB:FROM 622784 GB:TO 623764 GB:DIRECTION + GB:GENE CPE0501 GB:PRODUCT capsular polysaccharide biosynthsis protein GB:NOTE 326 aa, similar to gp:AF155804_7 Cps1K from Streptococcus suis (279 aa); 39.7% identity in 229 aa overlap GB:PROTEIN_ID BAB80207.1 LENGTH 326 SQ:AASEQ MVKVSIIIPIYNVENYLDKCLDTAVNQTLGCIEIIGIDDGSTDKSRDILNKYAKKYSFIKIINKENGGLSSARNTGIINAKGEYIYFLDSDDYIEYDSMKICYEIATKNKLDIVSFDAESFVDGEGFTKKLKKYDRKDILDGNIKMGCEYFCELIKNKCYTASACLNFYRREFLIDNNLFFYDGILHEDELYTVKAYTLANKVRYIPYKLYFRRLRSNSITTQSISEKHLYGRLIAARESYRHYLGYKDVFDNDTNTCLLNHISNMYYFMLKDIYENKRIYNKRYIIEDKIINDIKSKKDIKSFKLDLQYRFPLIIYTIKKYLKKD GT:EXON 1|1-326:0| BL:SWS:NREP 1 BL:SWS:REP 4->262|EPSJ_BACSU|1e-33|38.9|247/344| SEG 286->307|iiedkiindikskkdiksfkld| SEG 314->325|liiytikkylkk| BL:PDB:NREP 1 BL:PDB:REP 4->126|2z87B|2e-20|35.8|123/591| RP:PDB:NREP 1 RP:PDB:REP 1->207|3bcvA|4e-27|34.4|189/192| RP:PFM:NREP 1 RP:PFM:REP 5->126|PF00535|6e-23|43.0|121/148|Glycos_transf_2| HM:PFM:NREP 3 HM:PFM:REP 5->149|PF00535|9e-35|38.2|131/169|Glycos_transf_2| HM:PFM:REP 251->324|PF05408|6e-05|25.4|67/193|Peptidase_C28| HM:PFM:REP 176->211|PF04176|0.00058|41.7|36/182|TIP41| RP:SCP:NREP 1 RP:SCP:REP 1->207|1omxA|4e-23|12.5|192/250|c.68.1.15| HM:SCP:REP 3->231|1qg8A_|6.4e-50|35.7|213/255|c.68.1.1|1/1|Nucleotide-diphospho-sugar transferases| OP:NHOMO 1540 OP:NHOMOORG 636 OP:PATTERN 11----1-11--------1----13-----1-DA-1--1-2112311111154-2331221-----12 -11----1--------111-1-----11111--111-1-------53-2--12-11----341----798252226423273--2232DGF9-C12---A1554333717--------------231312142142---35-----179H666-----11--2-245BEA51221-2112111----14311-4323235521254544454426423-1224-12224222-2121111111111115213553-23441222111124152231349333-111-11311513351611111111111111444324444-2--95111121124423221511313--1481-1112-112------121-11---1-----2-2--111--11---------------21-2--231-222146334622-122-----1--2--11111111-3313214------------2222222221222---------1-111----31---------3------1-------1-1-1312-11-11---11-131-1--23212-11-2-3273166222--24496534B54----1-532-11385577515--1--11--123----11242-3-1-1-2---32-11--21-11----122------33---121223133222-1212411321221221321213-125511111111111111114-22--11--211111111112--1----------125--32111111212---5-------1--3312221---------111733332333----2-------2----11111111----2-15324444111111114--------1-----2---2222-----21-31--1-1438 ----31--------------------------------------------------------------------------------------------------------1-1--1------1-2--1-121---3---------11-1-1--1----22-111----------------1------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 285 STR:RPRED 87.4 SQ:SECSTR cccEEEEEEEcccTTTHHHHHHHHHTcccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccEEEEccTTccccTTHHHHHHHHHHTccEEEccEEEccHHHHHHHHGGGTcccHHHHHHHHHHHTcccETEEEEHHcccEEEEHHEEEHHHHHHTTcccccTTTTHHHHHHHHHHTTcccEEEcccTTcccccccHHHHHHHHHHHHHHHTTccccccccEEEcccccccHHHHTcccccHHHHHHHTTccccccccHHHHHH######################################### DISOP:02AL 326-327| PSIPRED ccEEEEEEEccccHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEcEEEEEcccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccEEcHHHHHHHHHHHcccEEEEcccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccc //