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Clostridium perfringens str. 13 (cper0)
Gene : CPE0710
DDBJ      :CPE0710      probable transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  103/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.58.4
:160 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->141 1i1gA PDBj 8e-14 35.3 %
:RPS:PDB   3->43 1bibA PDBj 6e-04 7.3 %
:RPS:PDB   60->141 2djwA PDBj 8e-14 26.9 %
:RPS:SCOP  4->56 1i1gA1  a.4.5.32 * 5e-10 43.4 %
:RPS:SCOP  60->144 2cg4A2  d.58.4.2 * 7e-14 13.4 %
:HMM:SCOP  3->57 2cg4A1 a.4.5.32 * 8.5e-06 32.7 %
:HMM:SCOP  58->141 1i1gA2 d.58.4.2 * 4.6e-14 35.0 %
:HMM:PFM   66->138 PF01037 * AsnC_trans_reg 7.3e-14 28.2 71/74  
:HMM:PFM   21->67 PF00941 * FAD_binding_5 7.7e-05 19.1 47/171  
:BLT:SWISS 9->155 YUGG_BACSU 5e-32 45.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80416.1 GT:GENE CPE0710 GT:PRODUCT probable transcriptional regulator GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 884390..884872 GB:FROM 884390 GB:TO 884872 GB:DIRECTION + GB:GENE CPE0710 GB:PRODUCT probable transcriptional regulator GB:NOTE 160 aa, similar to gpu:AP001518_182 transcriptional regulator (Lrp/AsnC family) from Bacillus halodurans (164 aa); 52.3% identity in 153 aa overlap Lrp/AsnC family GB:PROTEIN_ID BAB80416.1 LENGTH 160 SQ:AASEQ MEEILEVLEKNSRYTDQEIAVMTGKTVEEVREAIRDYEERSIIAGYTTLINWENTGRETVTALIEVQITPQRGVGFDKVAERIYKFPQVKACYLMSSGGFDLTVIVEGKTMKEVAMFVSDKLSIQEYVTGTATHFVLKKYKDHGTIFREKKTDDREMLFI GT:EXON 1|1-160:0| BL:SWS:NREP 1 BL:SWS:REP 9->155|YUGG_BACSU|5e-32|45.9|146/166| BL:PDB:NREP 1 BL:PDB:REP 4->141|1i1gA|8e-14|35.3|133/140| RP:PDB:NREP 2 RP:PDB:REP 3->43|1bibA|6e-04|7.3|41/294| RP:PDB:REP 60->141|2djwA|8e-14|26.9|78/80| HM:PFM:NREP 2 HM:PFM:REP 66->138|PF01037|7.3e-14|28.2|71/74|AsnC_trans_reg| HM:PFM:REP 21->67|PF00941|7.7e-05|19.1|47/171|FAD_binding_5| RP:SCP:NREP 2 RP:SCP:REP 4->56|1i1gA1|5e-10|43.4|53/60|a.4.5.32| RP:SCP:REP 60->144|2cg4A2|7e-14|13.4|82/86|d.58.4.2| HM:SCP:REP 3->57|2cg4A1|8.5e-06|32.7|55/0|a.4.5.32|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 58->141|1i1gA2|4.6e-14|35.0|80/0|d.58.4.2|1/1|Dimeric alpha+beta barrel| OP:NHOMO 128 OP:NHOMOORG 124 OP:PATTERN -----------------------11--11121-----------1111111111-1111---------- ------------------------------------------------------------------------111--------------------------1---1-1---------------------------------111-----------------------------------------------111111111111111111121111111111-111------11------------------------------------------------------------------------------------------1---1-------1-11---11111-1---111111-111--111111----------------1--------------------------------2-----------------------------------------------------------------------------1---------------------------------------------1--1-----------------------------------------------------------------------------------11---1--1---------1----1-11-11---------------------------------------------------------------------------------------------------1------------1----------------11111------1-------------------------------1111111-------------------------------------------------------------------------111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 145 STR:RPRED 90.6 SQ:SECSTR #HHHHHHHHHcTTccHHHHHHHHTccHHHHHHHHHHHHHTTccccccccccGGGGTcccEEEEEEEEEcGGGTTHHHHHHHHHTTcTTEEEEEEcccccccEEEEEEEccGGGHHHHcccccTTcTTEEEEEEEEEcccccTTccc############## DISOP:02AL 160-161| PSIPRED cHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEccEEEEcHHHccccEEEEEEEEEEccccHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHcccccEEEEEEEEEEEEcccccccccccccHHcccc //