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Clostridium perfringens str. 13 (cper0)
Gene : CPE0717
DDBJ      :CPE0717      hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  32/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:470 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   74->334 3fbqA PDBj 7e-15 28.3 %
:BLT:SWISS 192->291 PSTS_STAAB 3e-04 26.3 %
:BLT:SWISS 274->458 MUTL_CLOB1 2e-05 29.9 %
:PROS 180->194|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80423.1 GT:GENE CPE0717 GT:PRODUCT hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 890718..892130 GB:FROM 890718 GB:TO 892130 GB:DIRECTION + GB:GENE CPE0717 GB:PRODUCT hypothetical protein GB:NOTE 470 aa, some similarity to gpu:AP001520_227 BH4003 gene product from Bacillus halodurans (264 aa); 30.6% identity in 173 aa overlap. 1 putative transmembrane region was found by PSORT GB:PROTEIN_ID BAB80423.1 LENGTH 470 SQ:AASEQ MKNNDDLFDKDIRNRLKMENMKVPEEINKKIDDTINNLGKRKRNYKKASGICAACIAGTIIFGVTMPTYAQNIPILGKIFERFDSRIYENYDKYASDLNITKESNGYRVTINKIVYDTLDLEVFYTIQSDKPLEDGLDLLDIKLGINNNFISSGFGGRGEKVDDFTYVGVKDYSIASEEFAQGELKKNILGEDIKIPNNFDLNINISSLGNIKEDVKIEGDWNFNIPISDELVRENIKEQNLNINLGDELNGVELNKLIQTPINTVLQVTGTRDLHDYSTLSFFIFDDKGRYLYSKSGTGIGDASKNENSKLFTSYNFKEVYDDSKSLTIIPYIQREDMNKKGDSNEVTFPKEFKEKLNLNGETEIRLDNGEIYSKIKKIESVEKGTRLYYESKYSIYGAPSYIINNETGEKIEPIGNKEVGYTDNIKYVSGNEFYIDFKEELVGNNYTVVFSDRSNYEPYGESIKIDLK GT:EXON 1|1-470:0| BL:SWS:NREP 2 BL:SWS:REP 192->291|PSTS_STAAB|3e-04|26.3|99/327| BL:SWS:REP 274->458|MUTL_CLOB1|2e-05|29.9|177/666| PROS 180->194|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 1 TM:REGION 49->71| SEG 48->61|asgicaaciagtii| SEG 133->149|ledgldlldiklginnn| BL:PDB:NREP 1 BL:PDB:REP 74->334|3fbqA|7e-15|28.3|233/283| OP:NHOMO 42 OP:NHOMOORG 32 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11111111-111111------11--------------------------------------------------------------------------------------------------------------42221211111-----21--3--------11----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 233 STR:RPRED 49.6 SQ:SECSTR #########################################################################cccccHHHHTcccGGGGHHHHcEEEEEEEEETTEEEEEEEEEEcccEEEEEEEEEEccccccccEEEEEEEETTcc##cEEEEEEEEEEETTEEEE#####EEEEEEcccccccEE#########EEEEEEEEEEETTTTE##EEEEEEEEEEEE######EccccEEEEcccEEccccEEEEEEEEcccEEEEEEEHHHHHccccEEEEEEEETTccE#EcEEEEE###EEEcccccEEEEEEEEcccTTccEEEEEEEE######################################################################################################################################## DISOP:02AL 1-2, 35-39, 41-42, 150-159| PSIPRED ccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHccHHHHHHEEEEEEEccccEEEEEEEEEcccEEEEEEEEEEccccccccccccccccccccccccccccEEEEEcccEEEEEEEEEEcccccccccccEEEccccccccEEEEEEEEEccccccccccEEEEEEEEEEEEEEccEEEEEEEEccccccccccccEEEEEEEEEEEEEEEEEEEccccccccEEEEEEEEccccEEEEccccEEEcccccccEEEEEEEEEEcccccccEEEEEEEEEcccccccccccccccccEEEEEccccccccEEEcccccccEEEEEEEcccEEEEEEEEccccccccEEEEEcccccEEccccccccccEEEccEEcccEEEEEEHHHcccccEEEEcccccccccccccEEEEEc //