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Clostridium perfringens str. 13 (cper0)
Gene : CPE0778
DDBJ      :CPE0778      probable flavohemoprotein
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  464/915 : Eukaryota  106/199 : Viruses  0/175   --->[See Alignment]
b.43.4c.25.1
:248 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   5->248 1cqxA PDBj 2e-38 34.2 %
:RPS:PDB   5->244 1cqxA PDBj 9e-42 33.5 %
:RPS:SCOP  5->111 1cqxA2  b.43.4.2 * 1e-24 34.9 %
:RPS:SCOP  111->244 1gvhA3  c.25.1.5 * 5e-24 29.9 %
:HMM:SCOP  1->107 2piaA1 b.43.4.2 * 8.9e-27 35.6 %
:HMM:SCOP  99->241 1i7pA2 c.25.1.1 * 5.2e-30 32.6 %
:RPS:PFM   12->111 PF00970 * FAD_binding_6 2e-14 42.1 %
:HMM:PFM   11->110 PF00970 * FAD_binding_6 8.3e-18 30.2 96/99  
:HMM:PFM   121->225 PF00175 * NAD_binding_1 1.3e-11 23.0 100/109  
:BLT:SWISS 2->244 HMP_BACCR 3e-52 43.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80484.1 GT:GENE CPE0778 GT:PRODUCT probable flavohemoprotein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 961274..962020 GB:FROM 961274 GB:TO 962020 GB:DIRECTION + GB:GENE CPE0778 GB:PRODUCT probable flavohemoprotein GB:NOTE 248 aa, similar to C-terminal of gpu:AP001510_233 flavohemoglobin from Bacillus halodurans (411 aa); 37.9% identity in 240 aa overlap. 1 putative transmembrane region was found by PSORT GB:PROTEIN_ID BAB80484.1 LENGTH 248 SQ:AASEQ MENVWNGFRQLEIFKIEEEAKDIKSFYLRATDGKPLKEYKCGQFLPLKIETDDEVIKKEMRRYSLSGDPKKNYYRLTIKRVPNGKVSGYFHESINVGDTILAMPPFGNFTLTEDSNKPLVLLSGGIGITPILSMLYGAKEQSRDIYFVEAVLNSDNLALNSDVQGIKKVKNFKEIKIFSEPLESDIKGKDFDEEGFITKEWIKNNLPLNGEFFFCGPTLFMKSIRNSLKDLGVKEDNINFEFFGKEEF GT:EXON 1|1-248:0| BL:SWS:NREP 1 BL:SWS:REP 2->244|HMP_BACCR|3e-52|43.0|242/402| BL:PDB:NREP 1 BL:PDB:REP 5->248|1cqxA|2e-38|34.2|243/403| RP:PDB:NREP 1 RP:PDB:REP 5->244|1cqxA|9e-42|33.5|239/403| RP:PFM:NREP 1 RP:PFM:REP 12->111|PF00970|2e-14|42.1|95/99|FAD_binding_6| HM:PFM:NREP 2 HM:PFM:REP 11->110|PF00970|8.3e-18|30.2|96/99|FAD_binding_6| HM:PFM:REP 121->225|PF00175|1.3e-11|23.0|100/109|NAD_binding_1| GO:PFM:NREP 2 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00970|IPR008333| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00970|IPR008333| RP:SCP:NREP 2 RP:SCP:REP 5->111|1cqxA2|1e-24|34.9|106/111|b.43.4.2| RP:SCP:REP 111->244|1gvhA3|5e-24|29.9|134/143|c.25.1.5| HM:SCP:REP 1->107|2piaA1|8.9e-27|35.6|101/0|b.43.4.2|1/1|Riboflavin synthase domain-like| HM:SCP:REP 99->241|1i7pA2|5.2e-30|32.6|138/0|c.25.1.1|1/1|Ferredoxin reductase-like, C-terminal NADP-linked domain| OP:NHOMO 1323 OP:NHOMOORG 579 OP:PATTERN -----------------------------1--------------1----1-1--11---11----1-- -11-3---112--131111-14--15111111454544B5-114--12----12112---321-2323411----------------------------121221114-1-------------------------------------1-111---------------1-1---------------1-------2111111111111111111111111-111111------1111111111111111111112------------------1----------------------------------------------------1--1---1--12-1-----111-----------------1---------1-22--------113231-1111111111111-112-24324825-2--2-111152212522---136----1421111111121112----------------------------------141-23224656967444447797444426C985A89-175321-2-36313413121112-11111111--3331---2--1--111-------------2-1--------------------------1---342223623233333314433322133235--1-1-1------22-22113222322234-343332233432322322333321122222222222222222222233332--133333333333----------111-22351111-21----111-2221212-213-44454533455553222211111111-13342222223344----------1111----33--------------1-------------------------1-111-1------ ----331----11111212343333331212121-122121221--344877781213433331411322134232314423332512-1--2121222111-1-2--62---------------------------------------------------------------1--11------1-39432-2-2112- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 247 STR:RPRED 99.6 SQ:SECSTR #HHcccccEEEEEEEEEEccccEEEEEEEETTccccccccTTcEEEEEEEETTTTcEEEEEEEEcccccccccEEEEEEcccccHHHHHHHHHccTTcEEEEccccccccccTTccccEEEEEccccHHHHHHHHHHTccccccEEEEEEEccccccHHHHHHHHHHHcTTEEEEEEEccccTTcccTTTccEEccccGGGcHHHHccTcEEEEEccHHHHHHHHHHHHHTTccGGGEEEccccHEEc PSIPRED ccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccccEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEccccHHHHHHHHcccccEEEEEcccccEEEcccccccEEEEEccccHHHHHHHHHHHHHccccEEEEEEEccHHHcccHHHHHHHHHccccEEEEEEEcccccccccccccccccccHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccHHHEEEEccccccc //