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Clostridium perfringens str. 13 (cper0)
Gene : CPE0805
DDBJ      :CPE0805      cyclomaltodextrinase
Swiss-Prot:             

Homologs  Archaea  29/68 : Bacteria  626/915 : Eukaryota  136/199 : Viruses  0/175   --->[See Alignment]
b.1.18b.71.1c.1.8
:610 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->607 1smaA PDBj e-164 49.4 %
:RPS:PDB   7->608 1bvzA PDBj 2e-72 39.9 %
:RPS:SCOP  4->147 1ea9C1  b.1.18.2 * 1e-30 33.1 %
:RPS:SCOP  148->528 1h3gA3  c.1.8.1 * 6e-64 23.9 %
:RPS:SCOP  544->608 1h3gA2  b.71.1.1 * 8e-08 20.0 %
:HMM:SCOP  4->147 1ea9C1 b.1.18.2 * 9.8e-36 46.3 %
:HMM:SCOP  149->534 1j0hA3 c.1.8.1 * 2.1e-115 35.4 %
:HMM:SCOP  537->608 1smaA2 b.71.1.1 * 7.3e-06 22.2 %
:RPS:PFM   4->140 PF02903 * Alpha-amylase_N 3e-23 46.5 %
:RPS:PFM   201->490 PF00128 * Alpha-amylase 3e-48 38.2 %
:HMM:PFM   194->495 PF00128 * Alpha-amylase 1.3e-84 32.9 298/316  
:HMM:PFM   6->143 PF02903 * Alpha-amylase_N 3.9e-27 42.4 118/120  
:BLT:SWISS 6->607 NEPU_BACST e-162 48.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80511.1 GT:GENE CPE0805 GT:PRODUCT cyclomaltodextrinase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 988114..989946 GB:FROM 988114 GB:TO 989946 GB:DIRECTION + GB:GENE CPE0805 GB:PRODUCT cyclomaltodextrinase GB:NOTE 610 aa, similar to pir:S63617 cymH protein from Klebsiella oxytoca (598 aa); 54.7% identity in 563 aa overlap GB:PROTEIN_ID BAB80511.1 LENGTH 610 SQ:AASEQ MGKITREAIHHIAQSNYSYGYDNETLHLRVKTKKGEVNKVEIRIGDPYIWDEGGCDGGNMNATGGRWTGGKSYPMRKECETKYFDHWIVGYKPLTKRSRYGFILYGDEETLLCTEKRIEELDGKYDEEKLSAIGNFYCFPYLNAIDVAKTPQWVKDTVWYQIFPDRFCNGDKSIDPENVEPWGTEPTRDNFMGGDLQGVLDKLDYLCDLGINGLYFCPVFEATENHRYETIDYFKVDPALGGNEVFKKLVSEAHKRGMKIMLDAVFNHIGYFSPKWQDVLKNNEKSRYKDWFCIKKFPVLENGLENVDGNNLNYETFGRIATMPKLNTENPEVVEYLLKVAKFWVEEMDIDGWRLDVCNEVDHVFWRKFREVVKGTNKEVYILGEVWHDGLPWLMGDQFDSVMNYPVTDAVKEYFCLNQSNPEDFKYMIEANKVSYLRQIGETIFNLLDSHDTPRILTVAGGNKDKMKLAYLFMFTQAGSPCIYYGDEVGMEGNQGMGMEFHRRCMIWDENKQDKDMLKFMKQIIKIRKENKELNLLDNNWIRANKDENILIYSKENIFIIMNNSENEEKIYLPKELKNNKINDLFEEKIELLKEDIDLKPFAFKVYKKL GT:EXON 1|1-610:0| BL:SWS:NREP 1 BL:SWS:REP 6->607|NEPU_BACST|e-162|48.9|573/588| SEG 529->540|kenkelnlldnn| BL:PDB:NREP 1 BL:PDB:REP 6->607|1smaA|e-164|49.4|571/588| RP:PDB:NREP 1 RP:PDB:REP 7->608|1bvzA|2e-72|39.9|569/585| RP:PFM:NREP 2 RP:PFM:REP 4->140|PF02903|3e-23|46.5|114/116|Alpha-amylase_N| RP:PFM:REP 201->490|PF00128|3e-48|38.2|280/296|Alpha-amylase| HM:PFM:NREP 2 HM:PFM:REP 194->495|PF00128|1.3e-84|32.9|298/316|Alpha-amylase| HM:PFM:REP 6->143|PF02903|3.9e-27|42.4|118/120|Alpha-amylase_N| GO:PFM:NREP 5 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF02903|IPR004185| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF02903|IPR004185| GO:PFM GO:0003824|"GO:catalytic activity"|PF00128|IPR006047| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00128|IPR006047| GO:PFM GO:0043169|"GO:cation binding"|PF00128|IPR006047| RP:SCP:NREP 3 RP:SCP:REP 4->147|1ea9C1|1e-30|33.1|121/121|b.1.18.2| RP:SCP:REP 148->528|1h3gA3|6e-64|23.9|380/422|c.1.8.1| RP:SCP:REP 544->608|1h3gA2|8e-08|20.0|65/82|b.71.1.1| HM:SCP:REP 4->147|1ea9C1|9.8e-36|46.3|121/0|b.1.18.2|1/1|E set domains| HM:SCP:REP 149->534|1j0hA3|2.1e-115|35.4|376/0|c.1.8.1|1/1|(Trans)glycosidases| HM:SCP:REP 537->608|1smaA2|7.3e-06|22.2|72/0|b.71.1.1|1/1|Glycosyl hydrolase domain| OP:NHOMO 2376 OP:NHOMOORG 791 OP:PATTERN --1-1--1222222222-1111--3--4213--------------------1---2-232-111---- 5712513444413-15422-23--3222222235551354131224413552679422---142511642233223432--13-----3331-5-----614-145166-111111111111111121221111-256566---8237B345111--222222-2-44451-1-----1----9763412-273666666554656665354415555654-378455454-452222222222222211132452-5811525A922572524426552225434322233334232324222244442222233111333331-152222222827-422-4445-13--281111-1--81-134231-3--13331-----1233212-33333------------32522425423-2226643566342132312-333311-22222222111-1-41------------------------------22-2--1-1-111-1122222111421222-11111----2223-1-----25---131-31---------1321-1----1-1-------311-13--366263513---------------------------5542-32-4342322223-222-21-3--3---3---------37--2313333333333-33333334333333333333532111-421434444434444342213332--333333343333-------------1-713---232-------------------5C22421323411116222----------244422222365554244444122-------1221111--------1-5----1---1-3-----2---21---5673331455241 --11223-------38833ABBB8997331222---11---111216534677625424555-12-2441--3-547396-2222557-532835433511----1--21311111---1--1111---591-11411-11--1-11---1-11-11112-6244-277CB--33--13B---1-111-412--2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 609 STR:RPRED 99.8 SQ:SECSTR #ccccGGGccccccTTTEEEEETTEEEEEEEEETTcccEEEEEEEcTTccTTcccEEEEEccTTccccEEEEEEEEEEEEcccEEEEEEEEEcTTccEEEEEEEEcccccEEEEETTTcccEEEccHHHccGGHccEEEcccccTTcccccGGGGGccEEEEcHHHHccccTTcccTTccccTccccTTccccccHHHHHHHHHHHHHHTccEEEEcccccccccccccccccccccTTTccHHHHHHHHHHHHTTTccEEEEEcTTcccTTcHHHHHHHHHGGGcTTGGGcccccccccccccccccccccccccccccTTcccccTTcHHHHHHHHHHHHHHHHHHTccEEEETTGGGccHHHHHHHHHHHHHHcTTcEEEEccccccTTTTTTTcccEEEEHHHHHHHHHHHTTccccHHHHHHHHHHHHTTccHHHHTTcEEEcccTTcccHHHHTTTcHHHHHHHHHHHTTcccEEEEETTGGGTccccccccTTTTcccccccGGGccHHHHHHHHHHHHHHHHcTHHHHcEEEEEEEETTTTEEEEEEEEEEEEEEcccccEEEEEEccccccccEEcccccEETTEEEEEEcTTcEEEEEEE DISOP:02AL 1-3| PSIPRED cccEEcccEEcccccccEEEEcccEEEEEEEEccccccEEEEEEcccccccccccccEEEEEcccccccccccccEEEEccccccEEEEEEcccccccEEEEEEEccccEEEcccccccccccccccccccccccHHcccccccccccccccHHHccEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEcccccccccHHHHHcccccccccccEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHccHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHcccccEEEccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHccccHHHHHHHHHHHHHccccEEEEEccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHcccEEEEEEcccccEEEEEccEEEEEEEcccccEEEEccccccccEEEEEEccEEEEEccEEEEcccEEEEEEEc //