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Clostridium perfringens str. 13 (cper0)
Gene : CPE0834
DDBJ      :CPE0834      probable ABC transporter
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  909/915 : Eukaryota  197/199 : Viruses  1/175   --->[See Alignment]
c.37.1f.37.1
:596 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   264->591 2hydA PDBj 2e-43 33.0 %
:RPS:PDB   349->592 3b5jA PDBj 3e-54 35.1 %
:RPS:SCOP  223->332 2hydA2  f.37.1.1 * 3e-06 15.5 %
:RPS:SCOP  349->584 1b0uA  c.37.1.12 * 5e-45 22.6 %
:HMM:SCOP  1->331 2hydA2 f.37.1.1 * 5e-15 19.0 %
:HMM:SCOP  349->575 1pf4A1 c.37.1.12 * 1.9e-63 36.3 %
:RPS:PFM   390->520 PF00005 * ABC_tran 8e-15 43.3 %
:RPS:PFM   493->559 PF02463 * SMC_N 5e-04 35.8 %
:HMM:PFM   390->520 PF00005 * ABC_tran 4.5e-25 35.7 115/118  
:BLT:SWISS 249->578 SPAT_BACSU 6e-54 36.8 %
:PROS 492->506|PS00211|ABC_TRANSPORTER_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80540.1 GT:GENE CPE0834 GT:PRODUCT probable ABC transporter GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1021861..1023651 GB:FROM 1021861 GB:TO 1023651 GB:DIRECTION + GB:GENE CPE0834 GB:PRODUCT probable ABC transporter GB:NOTE 596 aa, similar to sp:SPAT_BACSU SUBTILIN TRANSPORT ATP-BINDING PROTEIN SPAT from Bacillus subtilis (614 aa); 29.6% identity in 578 aa overlap. 3 putative transmembrane regions were found by PSORT. ATP-binding protein GB:PROTEIN_ID BAB80540.1 LENGTH 596 SQ:AASEQ MENKEKYTSDLYIIKHFLKLAHGISKTYIPTLFFSSLFAAAVPFLNIIMPKYIIDELLGARRIKVLIMLVLLTVLGNGVLNLINRVLDKKCNIKNEEVVAGFDLLIGKKVMDLDFENIEDPEILNLKERALFPIRNQGAIWQLTYNISKGLTEILKIIGLIGVILTLDWIIIALIILIVLLSSFMYKKSQRLQHKFFDSLIPLNREFGYYINTINDFSAGKDIRLYNVAPLFVKKLDEFNINSTNVFIKMFSKLGVYEGLNEIVLQLQMVIVYGYITYKVLINSIGIGDFTMYTNAAINFSKSISNLFGSYVTIRQMCRYLQAFMEFENIESKHTKEGKKIGNLEKVNIEFKNVSFKYPRSKEFTLKNVSIKINEGEKLSVVGLNGAGKTTFIKLLARLYEPTEGEILLNGVNINEYDYDEYMKLLSVVFQDFKLMSFSIKENIALNDFNKVKDEEIEEVLIKSGFGKDLEKLPKGINTPVYKNFDEGGIEFSGGQAQKLAIARAVYKDAPIVILDEPTAALDPKAEYEIYSKFNELIGKKTTIYISHRLSSCRFCDNIAVFQKGKLIQYGTHDELVKDKGNEYETMYSAQAQYYI GT:EXON 1|1-596:0| BL:SWS:NREP 1 BL:SWS:REP 249->578|SPAT_BACSU|6e-54|36.8|326/614| PROS 492->506|PS00211|ABC_TRANSPORTER_1|PDOC00185| TM:NTM 4 TM:REGION 33->55| TM:REGION 64->86| TM:REGION 157->179| TM:REGION 264->286| SEG 69->87|lvlltvlgngvlnlinrvl| SEG 154->181|ilkiigligviltldwiiialiilivll| BL:PDB:NREP 1 BL:PDB:REP 264->591|2hydA|2e-43|33.0|321/578| RP:PDB:NREP 1 RP:PDB:REP 349->592|3b5jA|3e-54|35.1|239/243| RP:PFM:NREP 2 RP:PFM:REP 390->520|PF00005|8e-15|43.3|120/123|ABC_tran| RP:PFM:REP 493->559|PF02463|5e-04|35.8|67/536|SMC_N| HM:PFM:NREP 1 HM:PFM:REP 390->520|PF00005|4.5e-25|35.7|115/118|ABC_tran| GO:PFM:NREP 4 GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| GO:PFM GO:0005524|"GO:ATP binding"|PF02463|IPR003395| GO:PFM GO:0005694|"GO:chromosome"|PF02463|IPR003395| RP:SCP:NREP 2 RP:SCP:REP 223->332|2hydA2|3e-06|15.5|110/323|f.37.1.1| RP:SCP:REP 349->584|1b0uA|5e-45|22.6|234/258|c.37.1.12| HM:SCP:REP 1->331|2hydA2|5e-15|19.0|305/0|f.37.1.1|1/1|ABC transporter transmembrane region| HM:SCP:REP 349->575|1pf4A1|1.9e-63|36.3|223/244|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 43309 OP:NHOMOORG 1175 OP:PATTERN KKG6NGFJRRSORNTNZGGKFFBQgEIXWMTHJABDEBFEFDCRMMOXIQ*sc7PYPPSIOJEAQ269 JPdD*RMSaacMPJJGEGG-GL77MtGGGGGDMRRRh*swAVFjZeZUaONIlnnEHZ88WfbTtWd***QUSSSkYXfH*bSCCCABWXPN5MEIK-1IHWMMHZMaJU5555555AC87777HPKJQYMKRTYOYXWehHFEuJegkmdchRTOOLGKGJGSaQd***TONGMNMMKLMGLMLMCCthBTex********************z***bir**kovuvsss**aklmlmiijjkkkjjZcWae*pVhywfPletkiPQ**ZWSbkkilnstxxxu****tvuvrqtzrvtefdccgfhkhfcd*quljntsvkq***********k*o****dook*xn**vmoQE**pgPWekSQofrpPceQORMMMHJKIIJWJ***SMZvprwjrvtwuryrps*-abpbTsbk**JD*************tECJkz*ussv***MMMMMMMMVLPCGTHp566777777779B9DE8DDBBCCCB8696GC9CABm**nu******lhhhe****snooYq***niul9KhjgpTScYoh*w**SaUERHKZJDFFFHEFNPOMSVcp*GdJeUOTsSSWIVWVPMReKVJIMIdgSnPNMSGNMNONHBDDDECDCDHMGFIGFgepNdKXEPMvMTXXTMRZSQQQOWZbTWV4-DFNEE322333zn**Swmouutpsrroo-tonqompoprurpllnllq*****lpflnghjlkmlljjljhi*ifcjjjiP4************33FFCFCCDKLMLFCya*WVVXXVHPQNOQOQbKMNMMDQFGSdZikkjp*y*nswnnW***GEECDGEDEIclk*klllkz*zyxJNJDFEDFFG989866HWRRFGEF9A897999*6dBABAF-EFFCIGCQRMBIPBKFCBCanzaYi*knhBPG 6766kfO-gK89YgVIQRINQUPdTdPIJEFDFQRPFONMNJIEEETNRcWWfcLLVKNKILHCC7992EB5DCIBC2CE8999HD69-TjEQRRNFDGKDBFURJ7Otq*dnb*m*RNMMOdQ**M*L**s3*X*RQOPnTS*gKRNQInMG*QeYXuNp*UuYSN*ck*up*eDFGI*DDCLGrkm*J*zKO*x**Y ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ DISOP:02AL 1-10, 330-343| PSIPRED ccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEccccccEEccccEEEccccEEEEEccccccHHHHHHHHHHcccccccEEEEccEEcccccHHHHHHHccccccccEEEcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccHHHHHHHHHHHHHHcccEEEEEccHHHccHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHccEEEEEEccEEEEEccHHHHHHccccHHHHHHHHHHcccc //