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Clostridium perfringens str. 13 (cper0)
Gene : CPE0836
DDBJ      :CPE0836      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  10/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:542 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   87->155 PF03703 * DUF304 5e-04 27.7 %
:HMM:PFM   77->148 PF03703 * DUF304 1.4e-12 25.7 70/80  
:HMM:PFM   311->391 PF03703 * DUF304 3.6e-10 16.9 77/80  
:HMM:PFM   458->533 PF03703 * DUF304 2.4e-13 19.7 76/80  
:HMM:PFM   264->315 PF09715 * Plasmod_dom_1 3.1e-05 36.5 52/70  
:BLT:SWISS 310->401 YDBT_BACSU 3e-08 27.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80542.1 GT:GENE CPE0836 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1024374..1026002 GB:FROM 1024374 GB:TO 1026002 GB:DIRECTION + GB:GENE CPE0836 GB:PRODUCT conserved hypothetical protein GB:NOTE 542 aa, similar to pir:F69772 hypothetical protein ydbT from Bacillus subtilis (493 aa); 19.1% identity in 325 aa overlap. 6 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB80542.1 LENGTH 542 SQ:AASEQ MNEKLANKEISQCNYEKESLNNREIKNSVRSLLYNIVKGMISDFGLGLIFVVFLKQWVYILIIVLVLLGIAISILSWKKEYMLLKGDEAHYHKGVFSKNTTIIPKKSFKSMDISQNLIERILGYKIVKIESPSREVGEEDIKMSLSDEDIALLKSFAFGTNKEFNKELNNEVSEGFDLKDNLFRESFLDSEVEKLKEDYDSTLNNRENINESEKVHINNSGKVNIKEKKISNKDLILYGFTSFNLFIAIILIFNAWGKIEKFINSEYVDSVINGYIANEASKIGIIFAIVGLLLALIILKAIATVYYFVKYYNFTLLKEGENIKIKYGFFSTKEFSFKENSIKLIKLKSNPLRQLLKRYEINVVIKGYSGEGKEQIIMYPIGNSKEVQNIIREFIPKWSIEGEGEGIRHGKIFMIIKPVLIVFIISLVAYLILQIKWVWLINIISLITIPSSILKGRNINLKIEENKVHAVTGGFFRTIHILKGKDIQAVGFNTNPIQEKNNIGKIVIDYYSENSEEIKLPYMNKNYVEVLLNSSKGVMHRR GT:EXON 1|1-542:0| BL:SWS:NREP 1 BL:SWS:REP 310->401|YDBT_BACSU|3e-08|27.2|92/493| TM:NTM 6 TM:REGION 28->50| TM:REGION 55->76| TM:REGION 233->255| TM:REGION 284->306| TM:REGION 407->429| TM:REGION 433->455| SEG 60->76|iliivlvllgiaisils| SEG 243->255|fnlfiaiilifna| SEG 283->303|igiifaivglllaliilkaia| SEG 440->454|liniislitipssil| RP:PFM:NREP 1 RP:PFM:REP 87->155|PF03703|5e-04|27.7|65/78|DUF304| HM:PFM:NREP 4 HM:PFM:REP 77->148|PF03703|1.4e-12|25.7|70/80|DUF304| HM:PFM:REP 311->391|PF03703|3.6e-10|16.9|77/80|DUF304| HM:PFM:REP 458->533|PF03703|2.4e-13|19.7|76/80|DUF304| HM:PFM:REP 264->315|PF09715|3.1e-05|36.5|52/70|Plasmod_dom_1| OP:NHOMO 12 OP:NHOMOORG 10 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-----11------------------------------------------------------------------------------------------------------------------------------------111221----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-6, 8-25, 132-141, 366-374, 536-542| PSIPRED ccccccccHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEccEEEEEEEEEEEEEEEEcHHHcEEEccccHHHHHHHcEEEEEEEccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccccccccccHHHHcccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccHHHHHEccccccccEEHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEEEEEEEcHHHHcccEEEEEEEEEEccccccccEEEEccccHHHHHHHHHHHcccEEEcccccccccccEEEEHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccEEEccEEEEEEccEEEEEEEEEcEEEEEEEEEEcHHHHHcccEEEEEEEEcccEEEEEccccccHHHHHHHcccccccccc //