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Clostridium perfringens str. 13 (cper0)
Gene : CPE0937
DDBJ      :CPE0937      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  210/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
:489 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->251 3hqkD PDBj 6e-09 34.3 %
:RPS:PFM   22->392 PF00324 * AA_permease 1e-11 25.6 %
:HMM:PFM   21->422 PF00324 * AA_permease 1.5e-19 19.7 385/479  
:BLT:SWISS 3->467 YCAM_ECOLI 3e-48 24.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80643.1 GT:GENE CPE0937 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1135498..1136967 GB:FROM 1135498 GB:TO 1136967 GB:DIRECTION + GB:GENE CPE0937 GB:PRODUCT conserved hypothetical protein GB:NOTE 489 aa, similar to gp:CLOPBG_4 membrane-spanning transporter protein from Clostridium perfringens (495 aa); 33.1% identity in 417 aa overlap. Putative N-terminal signal sequence and 10 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB80643.1 LENGTH 489 SQ:AASEQ MGKDKKIKLWALVMLIFVPTFGFGNIASNAVYLGPAAIPSWVIVSILYFLPLCGIIAEMASANRDKEGGIYSWINKALGEKWAFVGTWTYFIGILFYLQMVFSRIPVAASWAILGKNVFTDSNAYLLPILSIVICIAMTYIATIGVSKFSKLADLGGQFTLGATVIFILMAIVGYFMGTPSATEFTVQNVIPDFNVSYFSTFSWLLFAVSGSEVAGTYIMQTENPKKTFPKAMIIATALIAFSYILGSVAIQFIASPEVLQKAGIQDAGYVVYYILANNFGINGKVIVQVYAAINLITSIAAYIIWMESPIRAMFGEVPKGTFPSFLTKKRKDGTLVNALWTQCAILVVLISIPLLGIGSINDFFKLLTDLSSLAVVVPYVVLICAFISFRKHNKDLDFKFFKSDALAYTVAGIALVLSCAGFFGAGLQDIVGSSGKDATILIIKTYGGPVILMALGLVLRALSEKSYKNKSLGNENIEVEIVEESICE GT:EXON 1|1-489:0| BL:SWS:NREP 1 BL:SWS:REP 3->467|YCAM_ECOLI|3e-48|24.6|463/476| TM:NTM 12 TM:REGION 8->30| TM:REGION 34->56| TM:REGION 90->112| TM:REGION 124->146| TM:REGION 158->180| TM:REGION 192->214| TM:REGION 233->255| TM:REGION 275->297| TM:REGION 340->362| TM:REGION 369->390| TM:REGION 409->431| TM:REGION 440->462| SEG 346->361|ilvvlisipllgigsi| SEG 475->485|nenieveivee| BL:PDB:NREP 1 BL:PDB:REP 13->251|3hqkD|6e-09|34.3|201/419| RP:PFM:NREP 1 RP:PFM:REP 22->392|PF00324|1e-11|25.6|355/429|AA_permease| HM:PFM:NREP 1 HM:PFM:REP 21->422|PF00324|1.5e-19|19.7|385/479|AA_permease| GO:PFM:NREP 3 GO:PFM GO:0006810|"GO:transport"|PF00324|IPR004841| GO:PFM GO:0016020|"GO:membrane"|PF00324|IPR004841| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00324|IPR004841| OP:NHOMO 550 OP:NHOMOORG 222 OP:PATTERN ------1------------------------------------1-1------------------1--- --2-1----------------------------------1-----------------1--1----------2111-----4-------1111-1-----------------1111111111111------------------------------------------------------------------1---11111111-1111-1------112-------12231-----------------------45514333518222243544--1323-------2--------------------------1-------------34444444343-2112777----1----------------11-------1---------------------11-1111---------------1------1-----------------------------------------------------------11-----------2---------------------------2----------------------------1---------------1-----2-1---1--------------------------------------------2-----------1--1--2------------------------21--21-5444544354-4555454544444455553111----1453444444444444412124433--1---------------222113334----------1--------------------------------------445234434--222-----32-32--------------------------------1----------1--------1-------------------- ---------------------------------------------------------------------------------------1---------------------------------------------------------------------------1---------1-----------1----3---111-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 293 STR:RPRED 59.9 SQ:SECSTR ##ccccccHHHHcccHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHH##HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH###HHTcccccccccHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTcTTcHHHHHHHccHHHHHHTTTTHHHHTccccHcccccccccTTTHHTHHHHcccTTHHHHHHHHHHHHHHHHHHHHTTTTHHHHTGGHHHHHHHHHHHHHHHHHHH#HHHHHHHHHHHHTTTHHHHHHHH############################################################################################################################################################################################ DISOP:02AL 1-5| PSIPRED ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcc //