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Clostridium perfringens str. 13 (cper0)
Gene : CPE0965
DDBJ      :CPE0965      probable sensory box/GGDEF family protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  645/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
a.118.8d.58.29
:545 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   381->537 3i5cB PDBj 1e-25 38.2 %
:RPS:PDB   79->273 2cg3A PDBj 4e-05 5.8 %
:RPS:PDB   381->537 3breB PDBj 8e-35 40.1 %
:RPS:SCOP  383->539 1w25A3  d.58.29.2 * 5e-32 30.6 %
:HMM:SCOP  32->177 2fbnA1 a.118.8.1 * 0.00033 22.1 %
:HMM:SCOP  383->539 1w25A3 d.58.29.2 * 4.2e-46 36.9 %
:RPS:PFM   378->531 PF00990 * GGDEF 3e-23 35.9 %
:HMM:PFM   380->532 PF00990 * GGDEF 8.4e-45 37.3 153/161  
:HMM:PFM   2->74 PF04932 * Wzy_C 8.8e-05 35.3 51/163  
:HMM:PFM   85->114 PF07719 * TPR_2 0.00025 20.0 30/34  
:HMM:PFM   211->274 PF06068 * TIP49 0.00088 31.2 64/398  
:BLT:SWISS 94->341 MED14_DEBHA 6e-05 21.1 %
:BLT:SWISS 381->537 PHY2_SYNY3 6e-26 43.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80671.1 GT:GENE CPE0965 GT:PRODUCT probable sensory box/GGDEF family protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1161697..1163334) GB:FROM 1161697 GB:TO 1163334 GB:DIRECTION - GB:GENE CPE0965 GB:PRODUCT probable sensory box/GGDEF family protein GB:NOTE 545 aa, similar to gpu:AE004307_6 sensory box/GGDEF family protein from Vibrio cholerae (884 aa); 46% identity in 161 aa overlap. Putative N-terminal signal sequence and 1 putative transmembrane region were found by PSORT GB:PROTEIN_ID BAB80671.1 LENGTH 545 SQ:AASEQ MKNRKKKYFLILLIFLIVINLFIFSFYKFKVNKKNEKYIKKTNVILYESKLEMKKRNFKDSENKLYSIIDNKDMFYSLPDNLKFEIYNYLAIINLQQEKFLNALSYYEEAFKYADKESKIIIKLNMTSAYRYMGAYVTATNILDKMLDSSLIFRNEDSYLKEYTLLNLAETYFAVNDMTDFNSTIEKASSTYYYGPENDLEDLKILLDSYLIIKAISENNLDLVPNYISEIEELEIKNKDVIYSELEMIKTRSYGMYYESIREFDLALDYFSKLEELADNEGASYVSLFSISERISIYRKLNDNKQVDSLINKYYEKQTSINDINNYEFKYYIDNKIINNHELPFLKETIIILIILFLTSILLVLFYLKKARDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFILKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSKTSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLEDNSSDSSN GT:EXON 1|1-545:0| BL:SWS:NREP 2 BL:SWS:REP 94->341|MED14_DEBHA|6e-05|21.1|246/1123| BL:SWS:REP 381->537|PHY2_SYNY3|6e-26|43.6|156/1276| TM:NTM 2 TM:REGION 9->28| TM:REGION 346->368| SEG 9->26|flilliflivinlfifsf| SEG 28->43|kfkvnkknekyikktn| SEG 350->365|iiiliilfltsillvl| BL:PDB:NREP 1 BL:PDB:REP 381->537|3i5cB|1e-25|38.2|157/198| RP:PDB:NREP 2 RP:PDB:REP 79->273|2cg3A|4e-05|5.8|173/617| RP:PDB:REP 381->537|3breB|8e-35|40.1|157/328| RP:PFM:NREP 1 RP:PFM:REP 378->531|PF00990|3e-23|35.9|153/160|GGDEF| HM:PFM:NREP 4 HM:PFM:REP 380->532|PF00990|8.4e-45|37.3|153/161|GGDEF| HM:PFM:REP 2->74|PF04932|8.8e-05|35.3|51/163|Wzy_C| HM:PFM:REP 85->114|PF07719|0.00025|20.0|30/34|TPR_2| HM:PFM:REP 211->274|PF06068|0.00088|31.2|64/398|TIP49| RP:SCP:NREP 1 RP:SCP:REP 383->539|1w25A3|5e-32|30.6|157/162|d.58.29.2| HM:SCP:REP 32->177|2fbnA1|0.00033|22.1|136/0|a.118.8.1|1/1|TPR-like| HM:SCP:REP 383->539|1w25A3|4.2e-46|36.9|157/0|d.58.29.2|1/1|Nucleotide cyclase| OP:NHOMO 7148 OP:NHOMOORG 653 OP:PATTERN -------------------------------------------------------------------- E9216---111---132----422--------7---2533646FP-------414-----541-72B1112---------6167BJ66-------------------------------------111111111619AA7811174gSRDII223CC---2--6F8-DCG3------------F57549814A2555555662665666-23322566365C2FE3333339C11111111111111111111--21--1----2211-1-11111-----------------------------------------------2BA5K77787779794I674455848--59A68FEFD775B9522442--8385662-----15SHJ64EQLELN3587368678G-NLCIH7KF8M41ALLIMNHONR86NA685291A979764--------9771-U8J11111111111111111111111-11111-4487398631EBDCGEC888788LT999938ENNALDJ-2JJBMERFHP12f95ROPPHSVUI-------36DHZn4IRGJHML9gQHFH1JGLYHLEVN5655B565G656-11111----------UBJNE11QNFWWVpGiRajececdkYhddVcZZSUsn---9PBX------AFIC3I7AAA9A999B9-9A9BA669A9A899AA99DAE9DE--16467666666566676B6753247--E34444433444---P-1-1-FGFFA9gCl---------------9899938-1-FWNNNMQUTSWSQQPOOOT-----2---WPVVQVVUUTWUVlmJJFGFGE8991111--V27766DD11111111618-------------------------B74C979777-1- -----------------------------------------------------------------------------------------------1--------------------------------------------------------------1----4---------52----------1--8-----6---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 474 STR:RPRED 87.0 SQ:SECSTR #####################################################ccccccccTTGGGGcTHHHHHHcccHTcHTcHHHHHHHHHHHHTTcHHHHHHHHHHHHHHcTTcHHccHHHHHHHHHHHHHHHcccHHHHHHHHEcHHHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHcccHccHHHHTcTTcccETccEEEEEEETTTTEEEEEEEETTEEEEEETcccTTccEEEEccHHHHHHHHTTcccHHHHHHTTccTcccHHHHHHHHHHHccTTcccccccccTTTTTcccccccGGGcccccTTTGGGGTccccccccccccccccccc###########cHHHHHHHHHTTccccccHHHcTTTccccHHHHHHHHHHHHHHHHcEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHcccTTcEEEEccccEEEEEEETccHHHHHHHHHHHHHHHHTTccEEccccTTEEccEEEEEEEccccccHHHHHHHHHHHHHHHHTTTcccEEEccH####### DISOP:02AL 1-5, 537-545| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHEEHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHcc //