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Clostridium perfringens str. 13 (cper0)
Gene : CPE1012
DDBJ      :CPE1012      probable translation initiation inhibitor
Swiss-Prot:             

Homologs  Archaea  37/68 : Bacteria  684/915 : Eukaryota  175/199 : Viruses  0/175   --->[See Alignment]
d.79.1
:126 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->123 1xrgC PDBj 5e-41 66.4 %
:RPS:PDB   3->126 2dyyD PDBj 3e-42 62.1 %
:RPS:SCOP  2->126 1jd1A  d.79.1.1 * 2e-42 39.2 %
:HMM:SCOP  3->126 1qd9A_ d.79.1.1 * 1.7e-47 54.0 %
:RPS:PFM   12->125 PF01042 * Ribonuc_L-PSP 2e-28 57.9 %
:HMM:PFM   8->124 PF01042 * Ribonuc_L-PSP 2.2e-49 59.8 117/121  
:BLT:SWISS 1->123 Y1251_PYRAB 2e-41 61.0 %
:PROS 101->119|PS01094|UPF0076

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80718.1 GT:GENE CPE1012 GT:PRODUCT probable translation initiation inhibitor GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1215083..1215463 GB:FROM 1215083 GB:TO 1215463 GB:DIRECTION + GB:GENE CPE1012 GB:PRODUCT probable translation initiation inhibitor GB:NOTE 126 aa, similar to pir:G75032 probable translation initiation inhibitor PAB0825 from Pyrococcus abyssi (strain Orsay) (127 aa); 61% identity in 123 aa overlap GB:PROTEIN_ID BAB80718.1 LENGTH 126 SQ:AASEQ MAKEIIKTNKAPGAIGPYSQGIKIGDFVYTSGQIPLNPETGVMAGSIEEQTAQSLENVKAILEAAGTSMDKVIKTTVFLSDMNDFVRMNEVYATYFTENQPARSAVEVAKLPKDAKIEIEVIATLK GT:EXON 1|1-126:0| BL:SWS:NREP 1 BL:SWS:REP 1->123|Y1251_PYRAB|2e-41|61.0|123/127| PROS 101->119|PS01094|UPF0076|PDOC00838| BL:PDB:NREP 1 BL:PDB:REP 4->123|1xrgC|5e-41|66.4|119/135| RP:PDB:NREP 1 RP:PDB:REP 3->126|2dyyD|3e-42|62.1|124/126| RP:PFM:NREP 1 RP:PFM:REP 12->125|PF01042|2e-28|57.9|114/119|Ribonuc_L-PSP| HM:PFM:NREP 1 HM:PFM:REP 8->124|PF01042|2.2e-49|59.8|117/121|Ribonuc_L-PSP| RP:SCP:NREP 1 RP:SCP:REP 2->126|1jd1A|2e-42|39.2|125/126|d.79.1.1| HM:SCP:REP 3->126|1qd9A_|1.7e-47|54.0|124/0|d.79.1.1|1/1|YjgF-like| OP:NHOMO 1580 OP:NHOMOORG 896 OP:PATTERN 11---111111111111111111-41131121--------------11------1111-11---1--- 143-1--1221---1---------11-----11----4521---221----14----1----1-111131-11111112-1211111111111111---11111131512--------------1---------1-11122111111-1111111221111111111111111111111111141111111111222222221222222113321222111111-1111112111111111111111-111113----------------1---1-111---1---11111111111111111111111111111111111111111222222122221222111111111-11--53-5--1-1111111115--211--------323---21--122222222223-22-1121313--6442216322674-12--1-1-11122---------------1-------------------------------24-1522132223222111133432111116253432--224--1--2-4252-21111123111111111121111115-131233311211111111111131111221111111111111111111111113212112124412222217233113421451-2111111111122211223333333333-2333433333233333332434111131112111111121221422233322-33332333322211-21111111111111121221111111111111111121442222224554254442556111111111134461111143422111111111111111111--------------1----------1--------2--------111111111-2- ----221----11122233423345322222223332323333111444665K84432222212313411121112222221111-11-36223225852111212-143511222111-111111121121-11211111111111-1-1111-111-3--231111263131111217112111112211-1----2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 126 STR:RPRED 100.0 SQ:SECSTR ccEEEEccTTccccccccccEEEETTEEEEEEEccccTTTccccccHHHHHHHHHHHHHHHHHHTTccGGGEEEEEEEEcccTTTTHHHHHHHHHHTTTccEEEEEEccccGGGccEEEEEEEEcc PSIPRED cccEEEccccccccccccccEEEEccEEEEEEEEEEEccccEEcccHHHHHHHHHHHHHHHHHHccccHHHEEEEEEEEccHHHHHHHHHHHHHHccccccEEEEEEHHHcccccEEEEEEEEEEc //