[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : CPE1027
DDBJ      :CPE1027      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  53/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:483 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   153->204 1wmxB PDBj 5e-04 42.3 %
:BLT:PDB   310->350 2z8dB PDBj 9e-05 46.2 %
:RPS:PDB   38->399 3ehtA PDBj 6e-20 15.2 %
:RPS:SCOP  41->477 1j1nA  c.94.1.1 * 9e-23 13.4 %
:HMM:SCOP  38->477 1y3nA1 c.94.1.1 * 2.1e-70 25.5 %
:RPS:PFM   344->476 PF12010 * DUF3502 1e-29 51.1 %
:HMM:PFM   343->480 PF12010 * DUF3502 1.9e-54 55.8 138/140  
:HMM:PFM   58->340 PF01547 * SBP_bac_1 5.5e-12 19.4 268/314  
:HMM:PFM   9->66 PF04584 * Pox_A28 8.9e-05 24.6 57/140  
:BLT:SWISS 37->477 YTCQ_BACSU 2e-06 23.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80733.1 GT:GENE CPE1027 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1228514..1229965 GB:FROM 1228514 GB:TO 1229965 GB:DIRECTION + GB:GENE CPE1027 GB:PRODUCT conserved hypothetical protein GB:NOTE 483 aa, similar to gpu:AP001509_234 BH0796 gene product from Bacillus halodurans (500 aa); 40.4% identity in 451 aa overlap. Putative N-terminal signal sequence was found by PSORT GB:PROTEIN_ID BAB80733.1 LENGTH 483 SQ:AASEQ MRKLEKSLLIIISAILMIFLIIFNIIKNGNYIKRLNNENIELVWYTIGIEPADMDRVEREVNDYLTKKINATIDIRFVDYADFTKVMNNKTKEGENFDLVFTSSWANDYYPNAKEGDFLNLNNLIKEYGKDVYKALDKKFWEGAAIDGCIYAIPNQKEISSMPMWVFSKEYVEKYNIPYKDIKTLEDLEPWLKLIKENEEGVIPFYVDDSYSVPMIWDQLAPALGINLESNNFQVVNIFKTEEMINNLKTMRRYKELRYTNTKIGNAGDFSTKRFVTKADGQPYAEKIWSIKSGGEVVATPILESYITNGSVNGSMIAISKNSKNPEKAMEFLNLLNTDKYLRNLINYGIEGVHYEKISNNKIRLLEESKNYMVDYYTLGNLFITYVLEDEPENKWDEFKEVNNKSNVSQALGFKFDHSKVSIELKDVNTVLEEFTRSLYTGLVDTDEYVSKLINKLESAGIDKVKEELERQLNDWKIKKQTF GT:EXON 1|1-483:0| BL:SWS:NREP 1 BL:SWS:REP 37->477|YTCQ_BACSU|2e-06|23.1|424/498| TM:NTM 1 TM:REGION 6->28| SEG 8->26|lliiisailmifliifnii| BL:PDB:NREP 2 BL:PDB:REP 153->204|1wmxB|5e-04|42.3|52/195| BL:PDB:REP 310->350|2z8dB|9e-05|46.2|39/399| RP:PDB:NREP 1 RP:PDB:REP 38->399|3ehtA|6e-20|15.2|336/452| RP:PFM:NREP 1 RP:PFM:REP 344->476|PF12010|1e-29|51.1|133/139|DUF3502| HM:PFM:NREP 3 HM:PFM:REP 343->480|PF12010|1.9e-54|55.8|138/140|DUF3502| HM:PFM:REP 58->340|PF01547|5.5e-12|19.4|268/314|SBP_bac_1| HM:PFM:REP 9->66|PF04584|8.9e-05|24.6|57/140|Pox_A28| RP:SCP:NREP 1 RP:SCP:REP 41->477|1j1nA|9e-23|13.4|434/492|c.94.1.1| HM:SCP:REP 38->477|1y3nA1|2.1e-70|25.5|432/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 88 OP:NHOMOORG 54 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------111111-L--------------------1----------11----------1-----11111--111111111112111111111111-11---111-1-------------------4515--2-------------------2----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 375 STR:RPRED 77.6 SQ:SECSTR #####################################cccEEEEEEccTccccHHHHHHHHHHHHHHHHccEcEEEEEccTTHHHHHHHHGGGTccccEEEEEHHHHHHHHTHHHTccccccccTTTTTTHccHHccTTHHHHTEETTEEcEEEEEEEcEEccEEEEETTTccccTcccccccccTHHHHTTHHHHHTTcEEEccccccHHHHHHHHTcEEEEEccccEEEEEEEcccHHHHHHHHHHHHHHTTTcccccccHHHHHHHHHHTcEEEEEEcGGGHHHHHHTTccEEEEcccEETTEEcccEEEEEEEEEcTTcccHHHHHHHHHHTTccHHHHHHHHHHccccHccccEEccHHHHHHHTTcHHHHHHHHHHHHcEEccccTHHHHHHHHHHTTcccHHHHH####################################################################### DISOP:02AL 1-3, 23-41, 481-483| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHccccccEEEEcccHHHHHHHHHcccEEccHHHHHHHHHHHHHHccHHHHHHHEEccEEEEEEEEccccccEEEEEEHHHHHHccccccccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHccccEEEEEccccEEEEccccHHHHHHHHHHHHHHHccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHccHHHHHHHHccccccccEEccccEEEEccccccccccEEEccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccc //