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Clostridium perfringens str. 13 (cper0)
Gene : CPE1057
DDBJ      :CPE1057      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  19/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.118.18a.118.8
:473 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->88 2kckA PDBj 4e-05 29.5 %
:BLT:PDB   77->152 2ocyA PDBj 3e-04 32.0 %
:BLT:PDB   329->451 2fo7A PDBj 3e-05 29.1 %
:RPS:PDB   8->77 2cg2A PDBj 3e-07 18.3 %
:RPS:PDB   328->458 2cfuA PDBj 3e-13 7.6 %
:RPS:SCOP  8->98 2ooeA1  a.118.8.7 * 1e-05 8.8 %
:RPS:SCOP  349->462 1ouvA  a.118.18.1 * 1e-07 15.7 %
:HMM:SCOP  4->378 1kt1A1 a.118.8.1 * 2.8e-09 30.2 %
:HMM:SCOP  330->458 2fbnA1 a.118.8.1 * 1.5e-10 28.0 %
:HMM:PFM   10->37 PF07719 * TPR_2 1.8e-05 53.6 28/34  
:HMM:PFM   386->411 PF07719 * TPR_2 0.00015 30.8 26/34  
:HMM:PFM   349->372 PF00515 * TPR_1 1.3e-06 41.7 24/34  
:HMM:PFM   219->273 PF11837 * DUF3357 5.3e-05 17.5 40/107  
:BLT:SWISS 1->181 SPO15_SCHPO 2e-05 25.9 %
:BLT:SWISS 285->459 Y856_MIMIV 9e-08 26.6 %
:TM
:REPEAT 2|371->413|414->456
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80763.1 GT:GENE CPE1057 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1263140..1264561) GB:FROM 1263140 GB:TO 1264561 GB:DIRECTION - GB:GENE CPE1057 GB:PRODUCT conserved hypothetical protein GB:NOTE 473 aa, partially similar to prf:2217303A periplasmic protein from Escherichia coli (262 aa); 26.7% identity in 101 aa overlap. 1 putative transmembrane region was found by PSORT GB:PROTEIN_ID BAB80763.1 LENGTH 473 SQ:AASEQ MSKYDKKLKKALAQYENGNYEEALDICEKVLDKDYNNEEALTLESRALEKLNRISDAIVSWKINAEYNNNEEARTKLDKFNNLDEKKLAMSTIFSETMKDEIKARLQEEAQKEYAKQLEKRDSEIKPLPKDTEKEKENKKVEQAPVIKINKEKPREDVKIDDIKPLDHKAKETSKTESNHLDNVTKVDFHKKDEIKKSKDKPKDDNEPKVISTPNFKNEKSNAKKSNKKKPVKYIAVAVSGAIVLLLAYGVTKNIKTTDASKNQITASEEANNNANKTENSTDNKTNEDSKKETKTITADELNKAISNNDINSLYTLLTSTPKDKVPQDALDAYNKAENLMKTDGVKDLYLKGSDLFKEKKYEDALKDFEKAYAFSSDSYLRPHLIYFMGTSYENLDKNTEAIKYFQEYLKDYKAKPDAEDFMYTPQCLYNLAILYNKEGNSAESKKYAQEIENDYPNTMFYNDVTKKIIYGN GT:EXON 1|1-473:0| BL:SWS:NREP 2 BL:SWS:REP 1->181|SPO15_SCHPO|2e-05|25.9|170/1957| BL:SWS:REP 285->459|Y856_MIMIV|9e-08|26.6|173/342| TM:NTM 1 TM:REGION 232->254| NREPEAT 1 REPEAT 2|371->413|414->456| SEG 191->209|kkdeikkskdkpkddnepk| SEG 215->233|nfkneksnakksnkkkpvk| SEG 266->284|taseeannnanktenstdn| BL:PDB:NREP 3 BL:PDB:REP 10->88|2kckA|4e-05|29.5|78/112| BL:PDB:REP 77->152|2ocyA|3e-04|32.0|75/146| BL:PDB:REP 329->451|2fo7A|3e-05|29.1|110/136| RP:PDB:NREP 2 RP:PDB:REP 8->77|2cg2A|3e-07|18.3|70/629| RP:PDB:REP 328->458|2cfuA|3e-13|7.6|118/627| HM:PFM:NREP 4 HM:PFM:REP 10->37|PF07719|1.8e-05|53.6|28/34|TPR_2| HM:PFM:REP 386->411|PF07719|0.00015|30.8|26/34|TPR_2| HM:PFM:REP 349->372|PF00515|1.3e-06|41.7|24/34|TPR_1| HM:PFM:REP 219->273|PF11837|5.3e-05|17.5|40/107|DUF3357| RP:SCP:NREP 2 RP:SCP:REP 8->98|2ooeA1|1e-05|8.8|91/527|a.118.8.7| RP:SCP:REP 349->462|1ouvA|1e-07|15.7|102/265|a.118.18.1| HM:SCP:REP 4->378|1kt1A1|2.8e-09|30.2|116/168|a.118.8.1|1/2|TPR-like| HM:SCP:REP 330->458|2fbnA1|1.5e-10|28.0|118/0|a.118.8.1|2/2|TPR-like| OP:NHOMO 19 OP:NHOMOORG 19 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111111111--111111-1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 322 STR:RPRED 68.1 SQ:SECSTR TTcHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHcTTcHHHHHHHHHHHHHHTcHHHHHHHTTcHHHHHHHTTcHHHHHHHTTcTTccEEEEEcHHHHHHHHTTcccHHHHHHTTcEEEEHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH#####################################################################################################################################################HHHHHHTTccccHHHHHHHHHHcccccccHHHHHHHHHHHTTTcHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHcTTcHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHccHHHHHHHHHHHccHHHTTccEEEEEEET## DISOP:02AL 1-5, 272-304| PSIPRED cccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHcccHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHcHHHHHHHHccc //