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Clostridium perfringens str. 13 (cper0)
Gene : CPE1065
DDBJ      :CPE1065      ferredoxin-like protein
Swiss-Prot:             

Homologs  Archaea  18/68 : Bacteria  229/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.58.1
:268 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   151->185 1clfA PDBj 3e-04 42.9 %
:BLT:PDB   173->246 2fug9 PDBj 2e-06 28.4 %
:BLT:PDB   219->262 2fdnA PDBj 2e-07 40.9 %
:RPS:PDB   215->258 3bk7A PDBj 3e-06 43.2 %
:RPS:SCOP  151->188 2v4jA1  d.58.1.5 * 1e-04 26.3 %
:RPS:SCOP  162->248 2fug91  d.58.1.5 * 4e-09 25.3 %
:RPS:SCOP  219->264 1durA  d.58.1.1 * 1e-08 42.2 %
:HMM:SCOP  38->204 1h7wA5 d.58.1.5 * 1.7e-12 29.1 %
:HMM:SCOP  145->266 1q16B_ d.58.1.5 * 2.5e-25 41.3 %
:RPS:PFM   45->76 PF04060 * FeS 8e-06 59.4 %
:HMM:PFM   145->161 PF00037 * Fer4 0.00039 52.9 17/24  
:HMM:PFM   168->189 PF00037 * Fer4 2e-09 50.0 22/24  
:HMM:PFM   219->235 PF00037 * Fer4 1.6e-07 58.8 17/24  
:HMM:PFM   242->263 PF00037 * Fer4 8.1e-11 59.1 22/24  
:HMM:PFM   45->77 PF04060 * FeS 3e-14 48.5 33/35  
:HMM:PFM   3->29 PF02687 * FtsX 0.0008 37.0 27/175  
:BLT:SWISS 30->185 RNFB_THIDA 3e-16 40.5 %
:BLT:SWISS 169->266 Y51A_METJA 7e-10 34.7 %
:PROS 174->185|PS00198|4FE4S_FER_1
:PROS 219->230|PS00198|4FE4S_FER_1
:PROS 248->259|PS00198|4FE4S_FER_1
:TM
:REPEAT 3|166->185|211->230|240->259
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80771.1 GT:GENE CPE1065 GT:PRODUCT ferredoxin-like protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1272333..1273139 GB:FROM 1272333 GB:TO 1273139 GB:DIRECTION + GB:GENE CPE1065 GB:PRODUCT ferredoxin-like protein GB:NOTE 268 aa, partially similar to pir:G69152 polyferredoxin from Methanobacterium thermoautotrophicum (strain Delta H) (261 aa); 31.6% identity in 117 aa overlap. Putative N-terminal signal sequence was found by PSORT GB:PROTEIN_ID BAB80771.1 LENGTH 268 SQ:AASEQ MDFSSILYSILILGVLGFLFGILLGFASKKFEVKVDERVTKIRAILPGANCGGCGYPGCDAYANALVEEGADMSLCGVGGPNVAKQIGEILGVKVKPVEKKVAFVKCMGDCKNKKIQLNIPKDKTCIEAKEFLSDKESEGCGFGCFGLGSCKEACKFGAISIVDGIAKIDSSKCVACKACIRVCPQNLIDIIKDDQKVIVNCNSNDSGKIVNKNCSVGCIGCKLCEKNCPNGAIKVENNLAIIDYEKCTSCGLCVSKCPKKAINLRKK GT:EXON 1|1-268:0| BL:SWS:NREP 2 BL:SWS:REP 30->185|RNFB_THIDA|3e-16|40.5|126/188| BL:SWS:REP 169->266|Y51A_METJA|7e-10|34.7|98/163| PROS 174->185|PS00198|4FE4S_FER_1|PDOC00176| PROS 219->230|PS00198|4FE4S_FER_1|PDOC00176| PROS 248->259|PS00198|4FE4S_FER_1|PDOC00176| TM:NTM 1 TM:REGION 6->28| NREPEAT 1 REPEAT 3|166->185|211->230|240->259| SEG 10->26|ililgvlgflfgillgf| SEG 137->150|esegcgfgcfglgs| SEG 189->200|idiikddqkviv| BL:PDB:NREP 3 BL:PDB:REP 151->185|1clfA|3e-04|42.9|35/55| BL:PDB:REP 173->246|2fug9|2e-06|28.4|74/154| BL:PDB:REP 219->262|2fdnA|2e-07|40.9|44/55| RP:PDB:NREP 1 RP:PDB:REP 215->258|3bk7A|3e-06|43.2|44/593| RP:PFM:NREP 1 RP:PFM:REP 45->76|PF04060|8e-06|59.4|32/35|FeS| HM:PFM:NREP 6 HM:PFM:REP 145->161|PF00037|0.00039|52.9|17/24|Fer4| HM:PFM:REP 168->189|PF00037|2e-09|50.0|22/24|Fer4| HM:PFM:REP 219->235|PF00037|1.6e-07|58.8|17/24|Fer4| HM:PFM:REP 242->263|PF00037|8.1e-11|59.1|22/24|Fer4| HM:PFM:REP 45->77|PF04060|3e-14|48.5|33/35|FeS| HM:PFM:REP 3->29|PF02687|0.0008|37.0|27/175|FtsX| GO:PFM:NREP 1 GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF04060|IPR007202| RP:SCP:NREP 3 RP:SCP:REP 151->188|2v4jA1|1e-04|26.3|38/81|d.58.1.5| RP:SCP:REP 162->248|2fug91|4e-09|25.3|87/154|d.58.1.5| RP:SCP:REP 219->264|1durA|1e-08|42.2|45/55|d.58.1.1| HM:SCP:REP 38->204|1h7wA5|1.7e-12|29.1|141/173|d.58.1.5|1/2|4Fe-4S ferredoxins| HM:SCP:REP 145->266|1q16B_|2.5e-25|41.3|104/509|d.58.1.5|1/1|4Fe-4S ferredoxins| OP:NHOMO 293 OP:NHOMOORG 247 OP:PATTERN --------------1-----------------31244255544-1----13112-------------- --------------------------------------------------------------------------------1-------1111-111--------------------------------1-111-11----------------------------------------------------22--------------------------------------------------------------------------------------------------------------------------------------21-31111111-11-111111-11111111--------122-11---1---------------------------------------------------11-----------------1111-----------------------------------------------------1---------------------------------------------------11-1--2----------111-13212111-211---------1-------21---------------------------1111--111111211111111111111111--11-1-------11-11111111111111-111111111111111111111111111111111111111111111111111--111111111111---1---------1-1---111111111111-1----------1---------------------------1111111111-1111-1-------------111--------------1-----------------------------1111-111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 118 STR:RPRED 44.0 SQ:SECSTR ######################################################################################################################################################TcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcTTcTTGGGTTccEEEEccccccHTcTccTTTccccHHHHHcHHHHTTcTTTEEEEcTTTcccccHHHHHcTTccEccETT DISOP:02AL 1-3| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccEEEEcHHHHHHHHHHcccccccHHHHHHHHHccccEEEcccccccHHHHHHHccccEEEEEccEEEEccccccccccHHHHccccccccEEEcccEEEcccccHHHHHHHHHHHHHccccHHHHHHcccccEEEEccEEEEcccccccccccHHHcccccEEEEEc //