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Clostridium perfringens str. 13 (cper0)
Gene : CPE1166
DDBJ      :CPE1166      lysine specific permease
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  488/915 : Eukaryota  128/199 : Viruses  0/175   --->[See Alignment]
:489 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   204->325 3giaA PDBj 2e-08 31.4 %
:RPS:PFM   32->420 PF00324 * AA_permease 9e-57 41.9 %
:HMM:PFM   17->463 PF00324 * AA_permease 7.2e-135 39.8 445/479  
:BLT:SWISS 9->448 LYSP_ECOLI e-134 51.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80872.1 GT:GENE CPE1166 GT:PRODUCT lysine specific permease GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1364467..1365936) GB:FROM 1364467 GB:TO 1365936 GB:DIRECTION - GB:GENE CPE1166 GB:PRODUCT lysine specific permease GB:NOTE 489 aa, similar to sp:LYSP_ECOLI LYSINE-SPECIFIC PERMEASE. from Escherichia coli (488 aa); 54.1% identity in 440 aa overlap. 11 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB80872.1 LENGTH 489 SQ:AASEQ MSQEQNTNLKRGLKSRHLSMIAMGGAIGTGIFLAMGDTLHQAGVGGAFVAYGIIGVMVYFLCTSLGEMATYMPETGSFGAYATKFVDPALGFALGWNYWYNWAITIAAEMVAGSLLMKFWFPNIPAIVWSALFLVIILTLNLLSAKAYGESEFWFAAVKVATVIIFLIVGVLMIFGILGGDNVGFKNFYENGGPFIGGAKSIFMIFLIAGFSFQGTELVGVAAGESEDPEKNVPKAVNTIFWRILLFYLGTILVIGALVPNAQAGVETSAFTIVFEKLGLAGAASIMNAIILTSVLSAGNSGMYASSRMLYAMAKNGMAPKIFEKTNSRGVPVNAIIITTIIASLCFLTGIYAENTVYVWLVAASGLSGFIAWLGIAICHYRFRKAYVAQGKDMSRLVYKAKLFPLGPIIALILCGIIVLGQGYAYLDVRNGVDWGGLISSYIGLPLFFGLFAYYKIKYKTKIIDLKDVDLSVEHIDTDESIEDEVFSY GT:EXON 1|1-489:0| BL:SWS:NREP 1 BL:SWS:REP 9->448|LYSP_ECOLI|e-134|51.9|439/489| TM:NTM 12 TM:REGION 16->38| TM:REGION 43->65| TM:REGION 91->113| TM:REGION 123->145| TM:REGION 157->179| TM:REGION 192->214| TM:REGION 237->259| TM:REGION 276->298| TM:REGION 330->352| TM:REGION 359->381| TM:REGION 404->425| TM:REGION 433->455| SEG 20->31|miamggaigtgi| SEG 132->143|lflviiltlnll| SEG 454->464|yykikyktkii| BL:PDB:NREP 1 BL:PDB:REP 204->325|3giaA|2e-08|31.4|121/433| RP:PFM:NREP 1 RP:PFM:REP 32->420|PF00324|9e-57|41.9|384/429|AA_permease| HM:PFM:NREP 1 HM:PFM:REP 17->463|PF00324|7.2e-135|39.8|445/479|AA_permease| GO:PFM:NREP 3 GO:PFM GO:0006810|"GO:transport"|PF00324|IPR004841| GO:PFM GO:0016020|"GO:membrane"|PF00324|IPR004841| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00324|IPR004841| OP:NHOMO 3845 OP:NHOMOORG 626 OP:PATTERN ------11--------1--------111------1--------1---1-1------------------ 21-2152333424271144-422264444443133329GD----2-31122299A824--1--A129644-4333444--4----1---------------1-----12-111111121111111-----------------------------------------------------------------141BAAAAABBC7AF9DDD12669BABA6469181344433626555555556555556878A1752542866777886426577377822232222331111111111133333333333332323332222-1-54343334413--4551332----1--1--2212--1-11-------1--1---34334-------------1-111111112------2---2--111-1211-1221--------------44444444-333---------------------11-1-11-111----1-1211-19CCCD836565AA33888848E935555-1332--1--7----1-------32---------------------3-1------------------------1-------3-1112111-------111---2------------------11--11------------9877795A998A88899-99B9988989989999998DDD8A7759899999999999899C99888894-888788788888--4------1111---2----------------GGHHEBA-----AB9B9D69-FIEB1333343333334---------------2244444445---------------------------------------------------1----------- ----1-------432KGDBNGECONOO9A8789DDDDCDCCAD99AIHGHOVjdDDGA9AAAGNPFGJ4MEEPDOOIALKDKKMRNE8-6K4G6BC6583998889----1---11-----11--1-1-121-12-----1--111-------1-113314--1---2--A--------------1123C1---1--1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 121 STR:RPRED 24.7 SQ:SECSTR ###########################################################################################################################################################################################################HHHHHHHGGGTHHHHHHTTGGGcccHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHTGGGHHHHHHHHHHHHHHH#HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHccccccccT#################################################################################################################################################################### DISOP:02AL 1-12, 486-487| PSIPRED ccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccHHHHHHHHHHHHHcc //