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Clostridium perfringens str. 13 (cper0)
Gene : CPE1199
DDBJ      :CPE1199      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  37/68 : Bacteria  325/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
:325 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   27->187 PF01554 * MatE 3e-13 31.4 %
:HMM:PFM   27->189 PF01554 * MatE 2.8e-29 23.0 161/162  
:HMM:PFM   253->322 PF01554 * MatE 1.5e-11 23.2 69/162  
:BLT:SWISS 14->314 MEPA_STAAC 7e-31 26.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80905.1 GT:GENE CPE1199 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1400875..1401852) GB:FROM 1400875 GB:TO 1401852 GB:DIRECTION - GB:GENE CPE1199 GB:PRODUCT conserved hypothetical protein GB:NOTE 325 aa, similar to gpu:AP001514_169 BH2163 gene product from Bacillus halodurans (464 aa); 37.9% identity in 309 aa overlap. Truncated by frameshift mutation (confirmed by PCR-direct sequencing). 8 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB80905.1 LENGTH 325 SQ:AASEQ MVNSMSKKETDLGRDSIGKLLFKLAMPAIIAQLVNVLYNIVDRMFIGRLQSGDMAMAGVGVAFPIIMIVAAFSGLVGMGGAPLAAIKMGEKKKEDAEEIMTNSFSALIGLALFLTVFFFIFKEPILWAFGASDATIGYALDYLGIYLVGTIFVQIALGMNSFINTQGFAKVGMITVMVGAIINIVLDPILIFGFNMGVKGAALATIIGQCASAIWVLYFLFGKQSILRIRKKFLKPKLKILFSIMALGVSPFIMQATESLVIISMNNNLLKYGGDLAVGAMTIMSSVMQIILLPLMGLSQGAQPIISYNYGANKVYRVKKPLNYF GT:EXON 1|1-325:0| BL:SWS:NREP 1 BL:SWS:REP 14->314|MEPA_STAAC|7e-31|26.8|299/451| TM:NTM 8 TM:REGION 17->39| TM:REGION 60->82| TM:REGION 104->126| TM:REGION 140->162| TM:REGION 171->193| TM:REGION 203->225| TM:REGION 240->262| TM:REGION 275->297| SEG 226->244|ilrirkkflkpklkilfsi| RP:PFM:NREP 1 RP:PFM:REP 27->187|PF01554|3e-13|31.4|159/161|MatE| HM:PFM:NREP 2 HM:PFM:REP 27->189|PF01554|2.8e-29|23.0|161/162|MatE| HM:PFM:REP 253->322|PF01554|1.5e-11|23.2|69/162|MatE| GO:PFM:NREP 5 GO:PFM GO:0006855|"GO:drug transmembrane transport"|PF01554|IPR002528| GO:PFM GO:0015238|"GO:drug transmembrane transporter activity"|PF01554|IPR002528| GO:PFM GO:0015297|"GO:antiporter activity"|PF01554|IPR002528| GO:PFM GO:0016020|"GO:membrane"|PF01554|IPR002528| GO:PFM GO:0055085|"GO:transmembrane transport"|PF01554|IPR002528| OP:NHOMO 958 OP:NHOMOORG 373 OP:PATTERN --2-11-----------------12113132-43111-3343411122-2645-2423324------- --1---------------------------------------------1----1----------1------1---4341253----1-55661832-----3-123---2--------------------1---11--------2-2-----------------------1------------------11-1-3333333233333332433-233411-2122555554-4-111111111111111--11112-11-1-1-22221122----222---1----22-----------1----1---1----221112223-975C999989AB994E558AA8H62591HC--55---244-1122-1542------------2-----------------------1--1-----1--1---12-211------112-----1--11111111-111---------------------------------11----------------------------------1-1------------1-----------1--------------11-1--1--2----1-1-11--1----151--211------111111111112-----33-112122222434421424332343334----1--------1---------1-11-------------------------------1111111111-11111---------------------------------------4---1--------------------1-1---------------------------244622222458331111111111-------D11----222121128------------1--------------3133222222-11 ----------------1---------------------------------------------------------------------------1-----------------------------------------------1---1----------------------------1----22--------211-1------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-16| PSIPRED ccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccc //