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Clostridium perfringens str. 13 (cper0)
Gene : CPE1238
DDBJ      :CPE1238      probable multidrug resistance protein
Swiss-Prot:             

Homologs  Archaea  40/68 : Bacteria  688/915 : Eukaryota  102/199 : Viruses  0/175   --->[See Alignment]
f.38.1
:482 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   88->191 2d33D PDBj 1e-05 7.7 %
:RPS:SCOP  17->192 1pw4A  f.38.1.1 * 9e-14 14.9 %
:HMM:SCOP  12->479 1pv7A_ f.38.1.2 * 5.8e-75 28.9 %
:RPS:PFM   25->381 PF07690 * MFS_1 2e-25 29.1 %
:HMM:PFM   31->204 PF07690 * MFS_1 3.5e-43 34.5 174/353  
:HMM:PFM   217->417 PF07690 * MFS_1 8.3e-23 27.1 199/353  
:BLT:SWISS 12->419 YEBQ_ECOLI 1e-50 29.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80944.1 GT:GENE CPE1238 GT:PRODUCT probable multidrug resistance protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1445449..1446897 GB:FROM 1445449 GB:TO 1446897 GB:DIRECTION + GB:GENE CPE1238 GB:PRODUCT probable multidrug resistance protein GB:NOTE 482 aa, similar to pir:B69532 multidrug resistance protein homolog from Archaeoglobus fulgidus (503 aa); 31.3% identity in 400 aa overlap. Putative N-terminal signal sequence and 11 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB80944.1 LENGTH 482 SQ:AASEQ MNNANENSKNTEDLVYKNRWFILAVLVMQPFMACLDSSIVNVALPILQKELGATMAGTEWIVSSYLIIISASILIFGRLGDMHSKSSVFIKGILIFVLGSFLCGISPSLPILVLSRVVQAIGAAMLMSTNQGIITDVFPPKERGKALGISGSFVALGSILGPALGGFIVTYFTWHYIFLINVPIGIICYIFAKKYLPIRIPKESESMDKPGATMFFIATILIFTSILISQHLGFTSIYVILGLIIGLIILALFLIYENKIKNPMLHLSLFKKPIFSVSLICAFISFTAINTINVIQPFYLNDILGYSPGKISVIMTAYPIVLFVIAPLSGTLSDKIGSKILTLIGLFLTGVSMILLSSLNSNSSETSIFLMLSLLGFSNGLFQSPNTNLIMSSVPKDKLGIAGGTNALIRNLGLAFGVSASTSILYAKMSKLAGFRVLGSVPNRPDIFISGMRFVYILVAISCFICLIISIAEYIQSKKNNK GT:EXON 1|1-482:0| BL:SWS:NREP 1 BL:SWS:REP 12->419|YEBQ_ECOLI|1e-50|29.7|407/457| TM:NTM 12 TM:REGION 20->42| TM:REGION 61->83| TM:REGION 97->119| TM:REGION 147->169| TM:REGION 171->192| TM:REGION 211->233| TM:REGION 237->259| TM:REGION 275->297| TM:REGION 309->331| TM:REGION 348->370| TM:REGION 412->434| TM:REGION 451->473| SEG 61->75|ivssyliiisasili| SEG 240->255|ilgliigliilalfli| SEG 355->364|llsslnsnss| RP:PDB:NREP 1 RP:PDB:REP 88->191|2d33D|1e-05|7.7|104/499| RP:PFM:NREP 1 RP:PFM:REP 25->381|PF07690|2e-25|29.1|313/347|MFS_1| HM:PFM:NREP 2 HM:PFM:REP 31->204|PF07690|3.5e-43|34.5|174/353|MFS_1| HM:PFM:REP 217->417|PF07690|8.3e-23|27.1|199/353|MFS_1| GO:PFM:NREP 1 GO:PFM GO:0055085|"GO:transmembrane transport"|PF07690|IPR011701| RP:SCP:NREP 1 RP:SCP:REP 17->192|1pw4A|9e-14|14.9|175/434|f.38.1.1| HM:SCP:REP 12->479|1pv7A_|5.8e-75|28.9|394/417|f.38.1.2|1/1|MFS general substrate transporter| OP:NHOMO 5179 OP:NHOMOORG 830 OP:PATTERN ------965555558615211--2--------2121--1111-AA5251-351----11-16762--- 4255q44688A56597988-8911KB88888ABAABHWLH6MCOB8744952CA7526--JK83A7CVRR21111322-3615131223311-2-----3-41--D-3-2--------------111111-1111-6774421154--1------11----1----2--3-------------2341-11283BDDEDEBCG7EGDCCE82CA7CEDB3355552667776CM3655656556555558658A6683EG35425FE77HH83966974433311-1233-----------11111111111111-----1--11--9D111212121145CC1443-----4--2-9A3331-13321111--11-71121113224B99324875552355345455A-445446492E1-I445AD4DED4866-1--121111---6666666643334216-----111----1--11-1--1--1------34245A68AJPRQRNFDDDDKKSNEEDE8FWHR7EAC--87C117445374A2251-21-532222222-1-11212613-32131223121223142154357212111-1--1--1-1--------111-55437121--22213333213433112121111-1----------68763946556666666-56666666665666666659GC8B8967547666666657576F66366651-855555555555----7647422221-443111-21-22-1-11266666361242-66767A8B35664377713232532312332333331212244444443221-------11--11-------------------------------------1--------221 ----11-------14BGMELLPSgenMFD8AACUQG8HDE8GGC9AQHFRRRjSFIHJH8AA445256441371A32132-5565685-GE6G5B66859625D9A--3-------------------------------------------------1-2---------4----1--------1--2-I----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 104 STR:RPRED 21.6 SQ:SECSTR #######################################################################################cccccHHHHHHHHHHHHHcccHHHHTTccEETTEEccccccccccGGGccccEEEEccccTTccHHHHHHHHcccEEEEEEEccTTcTTcccHHHHHHHHHHHH################################################################################################################################################################################################################################################################################################### DISOP:02AL 1-18, 477-482| PSIPRED ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc //