[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : CPE1278
DDBJ      :CPE1278      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  130/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
:638 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   36->567 PF03169 * OPT 8e-25 28.5 %
:HMM:PFM   34->594 PF03169 * OPT 4.2e-86 26.5 543/617  
:BLT:SWISS 12->74 MURB_LACSS 8e-04 36.1 %
:BLT:SWISS 51->569 Y561_HAEIN 5e-20 25.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB80984.1 GT:GENE CPE1278 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1498299..1500215) GB:FROM 1498299 GB:TO 1500215 GB:DIRECTION - GB:GENE CPE1278 GB:PRODUCT conserved hypothetical protein GB:NOTE 638 aa, similar to gp:LSEXOGC_2 L.sake gene cluster from Lactobacillus sakei (645 aa); 61.4% identity in 573 aa overlap. 16 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB80984.1 LENGTH 638 SQ:AASEQ MKKKLPKEAYGGVSGKDYVPYFTGKSKNGVNLPVLIIGIVLAIVFAASTAYSGMKSGLTVAAGIPGAIIGSVFVGIFARSKGILGKNITQGMASGGESIASGMIFVLPAIILIGSDFTFLEGVAAGVGGVLFGIGCLSLVYNYLIVEEHGKLMYPESMAISETLVASEGSEDSIKFMGIGFVISGIINVLTGSFLNLINNTVTYLGSKFYKWKFSTEVNPLLLGIGFIVGLEVSLTMFAGSILANFGIAPLIGYFSDMAEKSMHSWNDASMLIHQMDVNAISGSYVKYIGAGMMLCGGIIGAIKLIPTIIVSIKETLKASPVNEENAEKNSGSIIILLVGAVLAFVIGFFISNSIAMAITGAVVSIILSLLFVIVAGRLTGTIGTSNLPVSGMTIASLVILTLVFVIMGWTGKADNKALLLFATFMVVSISVAGGYSQSQKVTYIIGGSKKEMQNSFMIASIVGVVVVTGTILVLSSQLSITGADAPFALPQANLMSTLTSGIMEGNLPWPMIIVGVVMALFLYLVDLPIMTVAIGFYLPISTTSIILVGALIRVFIEKMSKSDHEKEVKVSNGISLSSGLVAGGSIVGLIGIVLQVTGIITPGTPTGFVASNGMAIIVLILLVLATTLPIMKSKVKH GT:EXON 1|1-638:0| BL:SWS:NREP 2 BL:SWS:REP 12->74|MURB_LACSS|8e-04|36.1|61/100| BL:SWS:REP 51->569|Y561_HAEIN|5e-20|25.1|499/633| TM:NTM 17 TM:REGION 30->50| TM:REGION 58->79| TM:REGION 98->120| TM:REGION 125->147| TM:REGION 174->196| TM:REGION 226->248| TM:REGION 292->314| TM:REGION 331->353| TM:REGION 358->380| TM:REGION 390->411| TM:REGION 418->438| TM:REGION 456->478| TM:REGION 486->508| TM:REGION 511->533| TM:REGION 541->563| TM:REGION 576->598| TM:REGION 612->633| SEG 122->130|gvaagvggv| SEG 461->476|sivgvvvvtgtilvls| SEG 574->608|gislssglvaggsivgligivlqvtgiitpgtptg| SEG 616->629|aiivlillvlattl| RP:PFM:NREP 1 RP:PFM:REP 36->567|PF03169|8e-25|28.5|508/579|OPT| HM:PFM:NREP 1 HM:PFM:REP 34->594|PF03169|4.2e-86|26.5|543/617|OPT| GO:PFM:NREP 1 GO:PFM GO:0055085|"GO:transmembrane transport"|PF03169|IPR004813| OP:NHOMO 146 OP:NHOMOORG 139 OP:PATTERN -------------------------11-----------------------------1-122------- 122--11-----11----------1111111--------------------------------1----------------1-------1111-111---------1-------------------------------------------------------------------------------------------------------------------------------------------------------12-----------1-1------------------------------------------------------11111111-1--1111111---11-1------1--1-1---1-1-1---111--------------------------------------1----------------------------------------111-----------------------------------11--11-11------------------------1111--111--------------------1111111-1----------------------------11111--------111111---------------------1---------------------------------------------------------------------------------------------------------------------------1-----1111-----11111111111-11-------------1111-------------------------------------11111111111111---------------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------3-----------------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-19, 170-171, 313-332, 566-567, 635-638| PSIPRED ccccccHHHcccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHEEEEEcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHEEHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //