[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : CPE1300
DDBJ      :CPE1300      probable amino acid antiporter
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  165/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
:485 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   23->380 3h6bC PDBj 8e-07 20.4 %
:RPS:PFM   210->429 PF00324 * AA_permease 5e-08 27.4 %
:HMM:PFM   39->458 PF00324 * AA_permease 1.1e-18 21.9 402/479  
:BLT:SWISS 8->470 GADC_LACLA e-136 53.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81006.1 GT:GENE CPE1300 GT:PRODUCT probable amino acid antiporter GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1537694..1539151) GB:FROM 1537694 GB:TO 1539151 GB:DIRECTION - GB:GENE CPE1300 GB:PRODUCT probable amino acid antiporter GB:NOTE 485 aa, similar to prf:2408418B gadC gene from Lactococcus lactis (503 aa); 58.1% identity in 475 aa overlap. Putative N-terminal signal sequence and 11 putative transmembrane regions were found by PSORT. extreme acid sensitivity protein GB:PROTEIN_ID BAB81006.1 LENGTH 485 SQ:AASEQ MKQEGTTKKSLTLFGFFAMTASMVMAVYEYPTFATSKLHLVFYLLLGGFLWFIPVALCAAEMATVDGWEKGGVFTWTGKNLGKKYGFANLFFEFFEITVGFVTMIYFILGALSYVFDWPALNSNPMIKFIGVLVIFWILALSQFGGTKYTAKIAKIGFIVGILLPAAILIILALVYIIQGNPIYISSKDNFVPDFTKVNTLVVFVSFILSYMGVEASATHANEMDNPKKEYPLAMLLLVIVAIVVSTLGGLAIAAVIPQDQINLSAGVVQTFAVLLGHFTANNTILVKIIALLLAFGVIAEVSSWVVGPTRGMIIAAEEGAIPKSWAKTNEHDVPVYLVIAQGIIVSIWDAVLTFGAGGSNLSFLAAMSLTVVIYLSGYILFFVGYIKAILGEGLNGAYQMPGGKPVKIIVAIIGLATSIFAFFISFVPPTSIAGNAVQSHEYMWMLIISYVISLILPFAIYDLCQKYMHSHEGNIHHIVAGHKH GT:EXON 1|1-485:0| BL:SWS:NREP 1 BL:SWS:REP 8->470|GADC_LACLA|e-136|53.4|461/503| TM:NTM 12 TM:REGION 10->32| TM:REGION 39->61| TM:REGION 92->114| TM:REGION 124->146| TM:REGION 157->179| TM:REGION 197->219| TM:REGION 234->256| TM:REGION 284->306| TM:REGION 335->357| TM:REGION 365->387| TM:REGION 407->429| TM:REGION 440->462| SEG 159->178|ivgillpaailiilalvyii| SEG 233->245|lamlllvivaivv| BL:PDB:NREP 1 BL:PDB:REP 23->380|3h6bC|8e-07|20.4|323/411| RP:PFM:NREP 1 RP:PFM:REP 210->429|PF00324|5e-08|27.4|215/429|AA_permease| HM:PFM:NREP 1 HM:PFM:REP 39->458|PF00324|1.1e-18|21.9|402/479|AA_permease| GO:PFM:NREP 3 GO:PFM GO:0006810|"GO:transport"|PF00324|IPR004841| GO:PFM GO:0016020|"GO:membrane"|PF00324|IPR004841| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00324|IPR004841| OP:NHOMO 323 OP:NHOMOORG 170 OP:PATTERN -------------------------------------------1-1---------------------- ----1---------1------------------------1--------------------11----------111-----3-------1111-1----------------11111111111111------------------------------------------------------------------1----------------------------------12231-----------------------313-1---1-411--1---1--1111-------11----------------------------------------2222222121-1--1443----------------------------------------------------11-1111---------------1-------------------------------------------------------------------------------1---------------------------2----------------------------1---------------1-----2-1---1--------------------------------------------1-----------------2------------------------1---3--3333322233-3333432333323233333-------12312222222222222-2113331--2---------------222114444---------------1---------------------------------545335434----1-----11----------------------------------------------1--------1----111------------1 -----------------------1-1-----------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 429 STR:RPRED 88.5 SQ:SECSTR ######################ccccTTHHHHHHHHcccccTHHHHHHHHHHHHHHHHHHHHHHHcc#ccccTHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHGGGccccc##cccc#ccTHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHTTTTTGGGTTTHHHHccccHHHHTTTcccccccccTTTHHHHHHHGHHTHHHHTTTTTHHHHTTTTccccTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHcccHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHTTTTTTcccccccTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHccGGGTTcHHHHHHHHHHHHHHHHHH##########HHHHccH##HHHHHHHHHHHHH#####HHHHHHcTTTccc############# DISOP:02AL 1-11, 483-485| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHHHHcccHHcccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccEEEEEHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccc //