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Clostridium perfringens str. 13 (cper0)
Gene : CPE1339
DDBJ      :CPE1339      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  204/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.19.1
:279 amino acids
:PSIPRED
:RPS:SCOP  4->173 1oxwA  c.19.1.3 * 5e-21 17.1 %
:HMM:SCOP  1->277 1oxwA_ c.19.1.3 * 1.9e-39 26.7 %
:RPS:PFM   4->166 PF01734 * Patatin 2e-07 37.3 %
:RPS:PFM   225->259 PF04007 * DUF354 1e-04 51.4 %
:HMM:PFM   4->169 PF01734 * Patatin 2.8e-19 28.3 166/204  
:BLT:SWISS 2->184 YJJU_ECOLI 3e-13 29.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81045.1 GT:GENE CPE1339 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1581169..1582008 GB:FROM 1581169 GB:TO 1582008 GB:DIRECTION + GB:GENE CPE1339 GB:PRODUCT conserved hypothetical protein GB:NOTE 279 aa, partially similar to gpu:AE004275_8 conserved hypothetical protein from Vibrio cholerae (389 aa); 32.3% identity in 167 aa overlap GB:PROTEIN_ID BAB81045.1 LENGTH 279 SQ:AASEQ MVSLVLEGGTFRPIFSAGVMDALLDNNIIFPYCIGVSAGITNGFSYFSNQKGRNIEILKKYRNDKRYLSLSNFFKCRSIFGLDFVFDELANKLFPYDFNALSNYKGKVLVGVTNANTGKTEYLDGKVKDEKYMALRATCAIPILFPAIKINGNEYYDGGLLDPIPIKKAIADGNEKHLIVLTRPKSYRKTLGKSNKLASKIVGRKYPNLKDTFLSRHIKYNETVKFCEELEKAGKALIIRPNEDEAIESFEKDVTKLEEAYNYGYNACIKNLEKINALF GT:EXON 1|1-279:0| BL:SWS:NREP 1 BL:SWS:REP 2->184|YJJU_ECOLI|3e-13|29.1|172/357| RP:PFM:NREP 2 RP:PFM:REP 4->166|PF01734|2e-07|37.3|150/182|Patatin| RP:PFM:REP 225->259|PF04007|1e-04|51.4|35/318|DUF354| HM:PFM:NREP 1 HM:PFM:REP 4->169|PF01734|2.8e-19|28.3|166/204|Patatin| GO:PFM:NREP 1 GO:PFM GO:0006629|"GO:lipid metabolic process"|PF01734|IPR002641| RP:SCP:NREP 1 RP:SCP:REP 4->173|1oxwA|5e-21|17.1|170/360|c.19.1.3| HM:SCP:REP 1->277|1oxwA_|1.9e-39|26.7|273/0|c.19.1.3|1/1|FabD/lysophospholipase-like| OP:NHOMO 253 OP:NHOMOORG 207 OP:PATTERN ---------------------------------------------3---------------------- -----1-1111112----------------------1-------------------1--------------12221111122------1112-1----------------------------------------------------------------------------------------------------112122122222222------222-------------111--------------------1-1--11111--11---11------111----------------------------------111-------11-------1-11-111111-1----21--------1--------11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---1---------------------------------------------------1121-2---112--2222-1-221221--2-1-------------11--11-1111111111-1111111111111111111-----1111111111111111111-1111111--111111111111--------------1---111111--------11111111--------------------------------21131111133222------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------1--------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIPRED cEEEEEccHHHHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHcccHHHHHHHHHHcccHHHccHHHccccccccccHHHHHHHHHHHccccHHHHHHccccEEEEEEEcccccEEEEccccccHHHHHHHHHcccccccccEEEccEEEEEcccccccHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHc //