[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : CPE1367
DDBJ      :CPE1367      hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  125/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:382 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->99 1a76A PDBj 1e-04 31.2 %
:RPS:PFM   154->372 PF07907 * YibE_F 1e-42 45.4 %
:HMM:PFM   130->374 PF07907 * YibE_F 2.4e-86 49.2 244/244  
:BLT:SWISS 22->99 FEN_METJA 3e-04 31.2 %
:BLT:SWISS 280->353 PSD_CLOTE 4e-05 35.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81073.1 GT:GENE CPE1367 GT:PRODUCT hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1613365..1614513) GB:FROM 1613365 GB:TO 1614513 GB:DIRECTION - GB:GENE CPE1367 GB:PRODUCT hypothetical protein GB:NOTE 382 aa, partially similar to pir:T37180 probable membrane protein from Streptomyces coelicolor (513 aa); 23.5% identity in 315 aa overlap. Putative N-terminal signal sequence and 7 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB81073.1 LENGTH 382 SQ:AASEQ MKNSKKSIIFIISTVLISFLIIGFSRFIFDNGFMKDRLNKNVKYYEGKVKRITKEMLEGDKYIEGIELGYQNIVIEILEGPEKGKEYEIVNNISRIYNMPVEEDTKVILGFFYEKDEIKDIAVYSYKRSNIIFLLVLLFVIVIIGVGGIKGIKSLVSLFFTCVCIIFLMIPLMLRGVNPILAAIFSALISIIVTLVLVSGINKKTFTAILGTLSGIIISGVIAIGFGKLANLSGISMEEAESMMYIAENTSLNIHGIMFAAILIASLGAVMDVAMSISSSIFEINDINDTLNKRGLFKSGMNIGKDIIGTMANTLILAFAGGSLNTIIMLYASNMSKNQILNLDVLCIEVVQGLAGSIGIILTVPITAFVASYFCNLNLKKV GT:EXON 1|1-382:0| BL:SWS:NREP 2 BL:SWS:REP 22->99|FEN_METJA|3e-04|31.2|77/100| BL:SWS:REP 280->353|PSD_CLOTE|4e-05|35.1|74/297| TM:NTM 8 TM:REGION 8->30| TM:REGION 129->151| TM:REGION 153->175| TM:REGION 180->202| TM:REGION 210->232| TM:REGION 257->279| TM:REGION 311->333| TM:REGION 347->369| SEG 2->13|knskksiifiis| SEG 131->153|iifllvllfviviigvggikgik| SEG 180->192|ilaaifsalisii| SEG 209->227|ilgtlsgiiisgviaigfg| BL:PDB:NREP 1 BL:PDB:REP 22->99|1a76A|1e-04|31.2|77/315| RP:PFM:NREP 1 RP:PFM:REP 154->372|PF07907|1e-42|45.4|218/244|YibE_F| HM:PFM:NREP 1 HM:PFM:REP 130->374|PF07907|2.4e-86|49.2|244/244|YibE_F| OP:NHOMO 174 OP:NHOMOORG 125 OP:PATTERN -------------------------------------------------------------------- ----1111111-11111----1---1------11111111---1-1--1---111--1---11--1-111-----------1------------------------------------------------1---1----------------------------------------------------------2---------------------------2----------12222222222222222222212111121222111111121-11121---------------------------------------------424311111111111-33111-1---2-1-1133-1---1------11---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1-1-12----------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------2---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 77 STR:RPRED 20.2 SQ:SECSTR #####################ccHHHHHHHHTcHHHHHHHHcTTHH#HHHHHHHccccccccccccccccHHHHHHHHTTTTcccHHHHHHHHHHHHHH########################################################################################################################################################################################################################################################################################### DISOP:02AL 1-4| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHEEEcHHHHcccccEEEEEEEEEEEEccccccccccccccEEEEEEEEEEEEcccccccEEEEEEEcccccccccccccEEEEEEEcccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //