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Clostridium perfringens str. 13 (cper0)
Gene : CPE1396
DDBJ      :CPE1396      ATP-dependent RNA helicase
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  832/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:528 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->381 2hyiC PDBj 6e-79 40.5 %
:RPS:PDB   6->343 1cu1A PDBj 1e-75 13.4 %
:RPS:SCOP  16->351 1pjrA1  c.37.1.19 * 2e-52 9.6 %
:HMM:SCOP  73->363 1wp9A2 c.37.1.19 * 1e-77 39.4 %
:RPS:PFM   28->190 PF00270 * DEAD 7e-43 54.9 %
:RPS:PFM   269->339 PF00271 * Helicase_C 7e-18 50.7 %
:RPS:PFM   452->523 PF03880 * DbpA 1e-06 29.2 %
:HMM:PFM   29->196 PF00270 * DEAD 7.9e-54 49.4 166/167  
:HMM:PFM   264->340 PF00271 * Helicase_C 8.4e-31 46.8 77/78  
:HMM:PFM   451->524 PF03880 * DbpA 6.9e-23 33.8 74/74  
:HMM:PFM   215->239 PF07710 * P53_tetramer 0.00062 30.4 23/42  
:HMM:PFM   356->404 PF12137 * RapA_C 0.00039 18.4 49/362  
:BLT:SWISS 6->448 CSHA_BACHK e-126 52.4 %
:BLT:SWISS 449->526 Y1029_TREPA 2e-04 21.8 %
:PROS 153->161|PS00039|DEAD_ATP_HELICASE

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81102.1 GT:GENE CPE1396 GT:PRODUCT ATP-dependent RNA helicase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION 1647504..1649090 GB:FROM 1647504 GB:TO 1649090 GB:DIRECTION + GB:GENE CPE1396 GB:PRODUCT ATP-dependent RNA helicase GB:NOTE 528 aa, similar to gpu:AP001515_118 ATP-dependent RNA helicase from Bacillus halodurans] (539 aa); 46.8% identity in 524 aa overlap GB:PROTEIN_ID BAB81102.1 LENGTH 528 SQ:AASEQ MNNIKFDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINNADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRALKNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQKHTKSKIIRKAVPTVDEIFQNKHNNIINNVKSTIEEASEDFQKFIPIATQLDEDYSLVDVAAALLKIVFDKESSFDYTSNSIEAPVMDETRLFMSVGRRDGITPKSLVNFLKETARISPKQVGDIDIKENFCFANVDADAVNNIMKKSMGKKLNKRTVNIEVAKKRK GT:EXON 1|1-528:0| BL:SWS:NREP 2 BL:SWS:REP 6->448|CSHA_BACHK|e-126|52.4|437/528| BL:SWS:REP 449->526|Y1029_TREPA|2e-04|21.8|78/228| PROS 153->161|PS00039|DEAD_ATP_HELICASE|PDOC00039| BL:PDB:NREP 1 BL:PDB:REP 6->381|2hyiC|6e-79|40.5|373/392| RP:PDB:NREP 1 RP:PDB:REP 6->343|1cu1A|1e-75|13.4|298/645| RP:PFM:NREP 3 RP:PFM:REP 28->190|PF00270|7e-43|54.9|162/167|DEAD| RP:PFM:REP 269->339|PF00271|7e-18|50.7|71/76|Helicase_C| RP:PFM:REP 452->523|PF03880|1e-06|29.2|72/74|DbpA| HM:PFM:NREP 5 HM:PFM:REP 29->196|PF00270|7.9e-54|49.4|166/167|DEAD| HM:PFM:REP 264->340|PF00271|8.4e-31|46.8|77/78|Helicase_C| HM:PFM:REP 451->524|PF03880|6.9e-23|33.8|74/74|DbpA| HM:PFM:REP 215->239|PF07710|0.00062|30.4|23/42|P53_tetramer| HM:PFM:REP 356->404|PF12137|0.00039|18.4|49/362|RapA_C| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 1 RP:SCP:REP 16->351|1pjrA1|2e-52|9.6|313/315|c.37.1.19| HM:SCP:REP 73->363|1wp9A2|1e-77|39.4|269/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 11038 OP:NHOMOORG 1087 OP:PATTERN ---2122322222233-3--21-21---11111112211111112143-4224111132221121-32 1111333333332332322-23113422222233333555-32343532444334423--4432333564221112221142-11111666825333--7398748A918--------------22213532221311121111113211222----12232121-2333311111111111131111--12477777776767777774577567773334465555555855444444444444444444453445544435334455354432233333333333333333333233333333333333343333333331635866666667673533555555-2-133116445-1111-1211-215-4323322212333333223433333333333333-3333333323223443333333333324333243344324444444435553323------------211122222122211111333324444355555554444445544443455544562444454544555654554344453222222232244584925253214333-554535555434365424--1-------1111111116111533AA8756C79ABBDDDDEEDDDDDCEEDDDD1-2232411111165666666666666666-66666666666566666666666655666666666666565566665666651655667755667114522222444446449434444344344444222222222256786768777767778783222222227BBBCAAAAA9CCCC44666666663333232-443322--------21322232---1--12---11121-11112234------35 XUNOWVS5*TRLSQVOOQPOPPPPPOPOOPOOOONNPQNOMOOONOQPPOOOOONOOONPPPPPOPOOHPRPPOPQRLRSOQOPOOMO-MeSOPRTTOPOQOQcecBV*Z*jujok*ZWaQWdVtpU*W**l3wj*RYaUlWZhTTabUTfSPwWhYUbb*vhbVTYkYe*jnkTNbai*geeTayn**Q*uYXcXZYf --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---- STR:NPRED 474 STR:RPRED 89.8 SQ:SECSTR ###HcTTEEEEEEEEEHHHHHHHHHccccccccccccccccEEEEEEccccccTTTHHHHHHHHHTTccTTTTTccEEEEEccHHHHHHHHHHHHHHTccTTccEEEccTccEEEcccccccccccEEEEEHHHHHHHTcccTTcccEEEEETTTcccHHHHHHHHHHHHHTTTTTccEEEEEEcccTTccccccHHHHccccEEEEcccccccccETTEEEEEccccccEEETTEEEcGGGTcccEEEEEccccHHHHHHHHHHHHTTccEEEEcTTcccccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEEEcccEEEEEEEEccHHHHHHHHTEEEEEEEHHHHccHHHHHHHTTccccccHHHcccGGGcGGcGGGGGGcTcccTTTTcccHHHHHHHHHHHHTTcHHHHHHHHTccTTcGGGGccccGGGccEETTEEcEEEcTTccGGTccHHHHHHHHHHHTT################################################### DISOP:02AL 1-2, 387-408, 432-448, 525-528| PSIPRED cccccHHHccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHccccccccccEEEEEEccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHcccEEEEEccHHHHHHHHcccEEEcccEEEEEEccHHccccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHcccccEEEEEccccccccccEEEEEEEccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEEcHHHcccccccccEEEEEcccccHHHcccccccEEccccccEEEEEEcHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHccccHHHcccEEEEccccEEEHHHHHHHHHHHHHHcccccccEEEEEEccccc //