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Clostridium perfringens str. 13 (cper0)
Gene : CPE1408
DDBJ      :CPE1408      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  269/915 : Eukaryota  23/199 : Viruses  0/175   --->[See Alignment]
d.286.1f.20.1
:523 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   79->439 1kplB PDBj 2e-26 28.5 %
:BLT:PDB   447->513 3jxoB PDBj 3e-08 38.8 %
:RPS:PDB   82->161 3ejyB PDBj 6e-33 37.5 %
:RPS:PDB   387->514 2bkoA PDBj 9e-08 14.1 %
:RPS:SCOP  82->432 1kpkA  f.20.1.1 * 3e-62 25.9 %
:RPS:SCOP  446->514 1vctA2  d.286.1.1 * 8e-08 20.3 %
:HMM:SCOP  9->438 1kpkA_ f.20.1.1 * 3.7e-101 37.7 %
:HMM:SCOP  431->521 1vctA2 d.286.1.1 * 1e-11 28.6 %
:RPS:PFM   85->414 PF00654 * Voltage_CLC 5e-33 30.2 %
:HMM:PFM   72->414 PF00654 * Voltage_CLC 4.7e-93 39.2 342/355  
:HMM:PFM   447->513 PF02080 * TrkA_C 2.2e-13 37.3 67/71  
:BLT:SWISS 79->428 CLCA_KLEP7 3e-28 29.7 %
:BLT:SWISS 446->509 TRKA_METJA 2e-05 31.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81114.1 GT:GENE CPE1408 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1659846..1661417) GB:FROM 1659846 GB:TO 1661417 GB:DIRECTION - GB:GENE CPE1408 GB:PRODUCT conserved hypothetical protein GB:NOTE 523 aa, similar to gpu:AE004383_5 conserved hypothetical protein from Vibrio cholerae (468 aa); 28.9% identity in 353 aa overlap. 11 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB81114.1 LENGTH 523 SQ:AASEQ MSNESTKKVLSHRKDLRFKLVLEGAAIGLLCSLVLVLNRIIVNYLFPLFKKLYAWAALSITNMIIVLVILAILGALVGFMVRREPMISGSGIPQVEGELIGKLKMNWLKILIYKFLGGVISLGAGLSLGREGPSVQMGAAVGEGFSNSLKRINIEKKYLITSGASAGLAAAFNAPLSGVIFALEEVHKSFSPLVLVSAMAASLVSDFVSKQFLGMNPSLGIENVPVLPLKYYWVLIILGVILGIGGAIFSKGILKVQSLYGKFKKVPVEVKVMIPFLLTGILGIFAPIILGGGHELIMDLATKSFPIKLLLAVLLVKFLLTIISFGAGTPGGIFFPLLLLGAVVGNIVGIVSCNAFGVPNQYIIDFIILAMAGNFASIVKAPITGIILITEMTGSFEHMLALSVVVIISYVTSDLLKSEPIYESLLERWIEKVGSEVEEPSNNKTLLEVGVELGSEAEGKEIKDVNWPETALLVAIKRGNNEIIPKGSIEIQSGDYLVVMVDESRASSVLEEIQFLTSAKEEI GT:EXON 1|1-523:0| BL:SWS:NREP 2 BL:SWS:REP 79->428|CLCA_KLEP7|3e-28|29.7|350/472| BL:SWS:REP 446->509|TRKA_METJA|2e-05|31.2|64/218| TM:NTM 11 TM:REGION 21->43| TM:REGION 60->81| TM:REGION 105->127| TM:REGION 158->180| TM:REGION 187->209| TM:REGION 232->254| TM:REGION 268->290| TM:REGION 306->328| TM:REGION 333->355| TM:REGION 364->386| TM:REGION 393->415| SEG 64->78|iivlvilailgalvg| SEG 162->171|sgasaglaaa| SEG 234->246|vliilgvilgigg| SEG 308->320|klllavllvkfll| SEG 328->341|gtpggiffpllllg| BL:PDB:NREP 2 BL:PDB:REP 79->439|1kplB|2e-26|28.5|361/451| BL:PDB:REP 447->513|3jxoB|3e-08|38.8|67/85| RP:PDB:NREP 2 RP:PDB:REP 82->161|3ejyB|6e-33|37.5|80/440| RP:PDB:REP 387->514|2bkoA|9e-08|14.1|128/190| RP:PFM:NREP 1 RP:PFM:REP 85->414|PF00654|5e-33|30.2|328/351|Voltage_CLC| HM:PFM:NREP 2 HM:PFM:REP 72->414|PF00654|4.7e-93|39.2|342/355|Voltage_CLC| HM:PFM:REP 447->513|PF02080|2.2e-13|37.3|67/71|TrkA_C| GO:PFM:NREP 4 GO:PFM GO:0005247|"GO:voltage-gated chloride channel activity"|PF00654|IPR001807| GO:PFM GO:0006821|"GO:chloride transport"|PF00654|IPR001807| GO:PFM GO:0016020|"GO:membrane"|PF00654|IPR001807| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00654|IPR001807| RP:SCP:NREP 2 RP:SCP:REP 82->432|1kpkA|3e-62|25.9|351/450|f.20.1.1| RP:SCP:REP 446->514|1vctA2|8e-08|20.3|69/94|d.286.1.1| HM:SCP:REP 9->438|1kpkA_|3.7e-101|37.7|430/450|f.20.1.1|1/1|Clc chloride channel| HM:SCP:REP 431->521|1vctA2|1e-11|28.6|91/0|d.286.1.1|1/1|TrkA C-terminal domain-like| OP:NHOMO 327 OP:NHOMOORG 300 OP:PATTERN -----1-1------------------------1---1------------1----1-1--1-------- 121-1-------1--------1----------1----1--1---------------------------1--1---1111---------1111-1--------1-----------------------1-1-1--1--1---------1211-----1111111--1-11-3-11--11111-11--------1-------------------------------------------------------------1211121121311222111121-11111111111--1111111111111111111111111111121111----1-----------1111222-1-11--------1-----1---1111------------11-----------------------11-11-11----2-------2--------1-----------------11-1--------------------------------------------111111-1111111111111-21-1--1-122--------------------1---------------1----11----11-----1-1--------1----------------------1----11---11-1-1-----1----------------1---------111-11-------------------------------111-1--111111111111111111---------111111111111---1-----111111-----------------------------------------------111111111-11111111111111-----------------1--------------1-1-------------------------1-----1----11 ----1-----------21------------------11-11-1-------11-1---------------1----1-----------------2-------1--1-----1----------------------------------------------------1--1-32-1--1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 436 STR:RPRED 83.4 SQ:SECSTR ##############################################################################HHHHHcGGGccccHHHHHHHHTTcccccHHHHHHHHHHHHHHHTTTTcccccHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHTcHHHHHHHHTTTTccccHTTccHHHHHHHHHHHHHHHHHHcccccccccccccccTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHccGGGccccTTTHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHHHHHHHcGGGcccHHHHHHHHHTHHHHHHTccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHcccEEEEEEccTTcTTTTccHHHHTHHHHcEEEEEEETTEEEEccTTccccTTcEEEEEEcHHHHHHHHHHHT######### DISOP:02AL 1-4, 8-9, 435-444, 522-523| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccEEcccccccEEEEEEEccEEEEEcccEEEccccEEEEEEcHHHHHHHHHHHHHHHHHHHcc //