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Clostridium perfringens str. 13 (cper0)
Gene : CPE1436
DDBJ      :CPE1436      hypothetical protein hemW
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  23/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:220 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   24->200 3dfzB PDBj 4e-13 28.1 %
:RPS:PDB   12->201 3dfzB PDBj 8e-05 19.1 %
:RPS:SCOP  23->105 1kyqA1  c.2.1.11 * 1e-07 24.1 %
:HMM:SCOP  10->121 1pjqA1 c.2.1.11 * 4.2e-10 20.5 %
:HMM:PFM   21->89 PF01488 * Shikimate_DH 0.00026 27.5 69/135  
:BLT:SWISS 24->200 SIRC_BACME 1e-13 28.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81142.1 GT:GENE CPE1436 GT:PRODUCT hypothetical protein hemW GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1693933..1694595) GB:FROM 1693933 GB:TO 1694595 GB:DIRECTION - GB:GENE CPE1436 GB:PRODUCT hypothetical protein hemW GB:NOTE 220 aa, similar to pir:T43857 hypothetical protein hemW from Clostridium perfringens (220 aa); 97.3% identity in 220 aa overlap GB:PROTEIN_ID BAB81142.1 LENGTH 220 SQ:AASEQ MCRNNREDIFNLVPINIISSKFHVKVIGGGKAATIKVKGLLEKGCYVHILSKEFSKEILDIENKNLKLEKGNYYKEFIKDAHLIIIAVNESSLVYKISKDCEKEYKLYLNAANYKEGMVAIPYSRCYENLGFSISSKLGSPRITRAIGEEVSNIIKENDIYSIKVAKIREKAKKEELKDNIIEIISSKEFKNAILEKREYEYLKNLLGEELANSLTLGLK GT:EXON 1|1-220:0| BL:SWS:NREP 1 BL:SWS:REP 24->200|SIRC_BACME|1e-13|28.0|175/202| BL:PDB:NREP 1 BL:PDB:REP 24->200|3dfzB|4e-13|28.1|171/199| RP:PDB:NREP 1 RP:PDB:REP 12->201|3dfzB|8e-05|19.1|188/199| HM:PFM:NREP 1 HM:PFM:REP 21->89|PF01488|0.00026|27.5|69/135|Shikimate_DH| RP:SCP:NREP 1 RP:SCP:REP 23->105|1kyqA1|1e-07|24.1|83/139|c.2.1.11| HM:SCP:REP 10->121|1pjqA1|4.2e-10|20.5|112/113|c.2.1.11|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 26 OP:NHOMOORG 26 OP:PATTERN ------1--------1-----1---------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------11-------------------------------------------------------------------------------------------------------------------1--111111111111--11-111-1---------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 190 STR:RPRED 86.4 SQ:SECSTR ###########ccccccccTTcEEEEEcccHHHHHHHHHHTTcccEEEEEcccccccHHHHHHHHTTcEEEEcccccGGGGccccEEEEccccHHHHHHHcccTTcEEEETTccccccccccEEEEETTEEEEEccTTccHHHHHHHHHHHHHHccTHHHHHHHHHHHHTccccHHHHHHHHHHTccHHHHHcHHHHHHHH################### DISOP:02AL 1-4| PSIPRED cccccHHHHHHHccEEEEEcccEEEEEEccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHccEEEEEccccHHHHccEEEEEEccccHHHHHHHHHHHHHHccEEEEccccccccEEEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccc //