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Clostridium perfringens str. 13 (cper0)
Gene : CPE1441
DDBJ      :CPE1441      probable transcription regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  156/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5b.82.3
:230 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->223 3i54D PDBj 2e-08 17.2 %
:RPS:PDB   7->225 3e6cC PDBj 1e-28 16.1 %
:RPS:SCOP  1->145 2h6bA2  b.82.3.2 * 9e-21 16.1 %
:RPS:SCOP  150->203 2h6bA1  a.4.5.4 * 2e-05 22.2 %
:HMM:SCOP  19->145 1omiA1 b.82.3.3 * 2.6e-27 29.1 %
:HMM:SCOP  148->226 1omiA2 a.4.5.4 * 2.2e-18 34.2 %
:RPS:PFM   36->119 PF00027 * cNMP_binding 6e-09 33.3 %
:HMM:PFM   36->121 PF00027 * cNMP_binding 4.1e-16 29.1 86/91  
:HMM:PFM   181->207 PF00325 * Crp 1e-06 44.4 27/32  
:BLT:SWISS 18->202 FNR_BACSU 4e-12 22.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81147.1 GT:GENE CPE1441 GT:PRODUCT probable transcription regulator GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1699211..1699903) GB:FROM 1699211 GB:TO 1699903 GB:DIRECTION - GB:GENE CPE1441 GB:PRODUCT probable transcription regulator GB:NOTE 230 aa, similar to pir:T36556 probable transcription regulator from Streptomyces coelicolor (224 aa); 22.9% identity in 192 aa overlap Crp/Fnr family GB:PROTEIN_ID BAB81147.1 LENGTH 230 SQ:AASEQ MKALSSDKLKDISFFSGLNDETLKYIEKNSKVLKKKKGEHIFRDKDKVQDIFIVLKGKVTLYKMNEYGQKRIVYILGEESFLNEVIVDDLPASINGEAFENSIILSIDKNKLLNIMSQDFELTKIVLNEMSKKVRRLYRQMKNVTPIKLEKRVAAKLWKLSKDYGKEVPEGTLIDLDISITYLADMFGSPRESVSRAIKTLRDENLIIKENKKIIVPDREKIAAYFKSLI GT:EXON 1|1-230:0| BL:SWS:NREP 1 BL:SWS:REP 18->202|FNR_BACSU|4e-12|22.7|185/238| SEG 204->215|enliikenkkii| BL:PDB:NREP 1 BL:PDB:REP 15->223|3i54D|2e-08|17.2|209/228| RP:PDB:NREP 1 RP:PDB:REP 7->225|3e6cC|1e-28|16.1|217/225| RP:PFM:NREP 1 RP:PFM:REP 36->119|PF00027|6e-09|33.3|84/90|cNMP_binding| HM:PFM:NREP 2 HM:PFM:REP 36->121|PF00027|4.1e-16|29.1|86/91|cNMP_binding| HM:PFM:REP 181->207|PF00325|1e-06|44.4|27/32|Crp| RP:SCP:NREP 2 RP:SCP:REP 1->145|2h6bA2|9e-21|16.1|143/145|b.82.3.2| RP:SCP:REP 150->203|2h6bA1|2e-05|22.2|54/82|a.4.5.4| HM:SCP:REP 19->145|1omiA1|2.6e-27|29.1|127/0|b.82.3.3|1/1|cAMP-binding domain-like| HM:SCP:REP 148->226|1omiA2|2.2e-18|34.2|79/0|a.4.5.4|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 216 OP:NHOMOORG 157 OP:PATTERN -------------------------------------------------------------------- --1-1---------1-------------------------1----1-1-----1111---212----111------------1--211-----------------1-1-1------------------------1------1-1--1112----111------111-1--1------------111--11--21--------1-1-1-1--11-1----12---1------111-------------------------------------1-11-----------------------------------------------1-2313333232223211--1444-21-11--113532--3--1--1-----2-----------11-----21---1111111111---------1--1--------------------2------------------------------------------------------------------------------------------------12-----------1----------------221-4111211--1--1-111111121------211--1----------------11-11-------------1---------------------------------------------------------------------------------------------------------------------1-----------1-----------------11-111-------------------1----------------------------------------------------------------------------------------1---------1- ---------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 225 STR:RPRED 97.8 SQ:SECSTR ###HHHccccccccccccccGGGGGGGGGcEEEEEcTTcEEEcTTcccccEEEEEEccEEEEEEcTTccEEEEEEEcTTcEEcccccccccEEEEEEEcccEEEEEEcHHHHHHHHHHcTHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHcEEETTEEEEEccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEcccEEEEccHHHHHHHHHc## DISOP:02AL 1-4| PSIPRED cccccHHHHHcccccccccHHHHHHHHHHcEEEEEccccEEEcccccccEEEEEEEEEEEEEEEcccccEEEEEEEcccccHHHHHHcccccEEEEEEEEcEEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHcccHHHHHHHHHHHHHcccEEEcccEEEEEcHHHHHHHHHHcc //