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Clostridium perfringens str. 13 (cper0)
Gene : CPE1447
DDBJ      :CPE1447      hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  20/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.118.8
:250 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   13->131 1na0A PDBj 4e-04 31.0 %
:RPS:PDB   15->239 2cg3A PDBj 3e-07 7.8 %
:RPS:SCOP  12->235 1hz4A  a.118.8.2 * 4e-07 11.7 %
:HMM:SCOP  14->168 1qqeA_ a.118.8.1 * 1.9e-13 21.9 %
:HMM:SCOP  100->240 1iygA_ a.118.8.1 * 3.9e-08 28.3 %
:HMM:PFM   100->127 PF00515 * TPR_1 0.00011 25.0 28/34  
:HMM:PFM   27->82 PF03532 * OMS28_porin 0.00024 35.7 56/253  
:HMM:PFM   134->173 PF08861 * DUF1828 0.00082 27.5 40/90  
:BLT:SWISS 15->158 NPRA_BACST 1e-08 22.2 %
:COIL

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81153.1 GT:GENE CPE1447 GT:PRODUCT hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1706074..1706826) GB:FROM 1706074 GB:TO 1706826 GB:DIRECTION - GB:GENE CPE1447 GB:PRODUCT hypothetical protein GB:NOTE 250 aa, partially similar to prf:1616280A neutral protease transcriptional activator from Bacillus stearothermophilus (406 aa); 22.2% identity in 144 aa overlap. ATA start GB:PROTEIN_ID BAB81153.1 LENGTH 250 SQ:AASEQ MYINNKLTEDLLLGEIYYLISKTYFFIENIQKAINFAFLAKSEFEKVYNKKAYAKSLELLAEEHAKVGDLESAIAYSKQSLNVYKELEQLDKISSIEDSLGKLFFEFDNIEESFEHYNRAIKIREENTDSKLLDTLFNLCENHIKTKNMNKCIEILNEIKNKLNVSDVNRLIEYKILTFRIEVLQNNIKEAENILLDTLEIAKRNDMKKKEADISIRLGKFYLELKRDYEAAKYLDKGINNLKNLGVIKS GT:EXON 1|1-250:0| BL:SWS:NREP 1 BL:SWS:REP 15->158|NPRA_BACST|1e-08|22.2|144/406| COIL:NAA 41 COIL:NSEG 1 COIL:REGION 173->213| BL:PDB:NREP 1 BL:PDB:REP 13->131|1na0A|4e-04|31.0|100/119| RP:PDB:NREP 1 RP:PDB:REP 15->239|2cg3A|3e-07|7.8|205/617| HM:PFM:NREP 3 HM:PFM:REP 100->127|PF00515|0.00011|25.0|28/34|TPR_1| HM:PFM:REP 27->82|PF03532|0.00024|35.7|56/253|OMS28_porin| HM:PFM:REP 134->173|PF08861|0.00082|27.5|40/90|DUF1828| RP:SCP:NREP 1 RP:SCP:REP 12->235|1hz4A|4e-07|11.7|223/366|a.118.8.2| HM:SCP:REP 14->168|1qqeA_|1.9e-13|21.9|155/290|a.118.8.1|1/2|TPR-like| HM:SCP:REP 100->240|1iygA_|3.9e-08|28.3|92/133|a.118.8.1|2/2|TPR-like| OP:NHOMO 20 OP:NHOMOORG 20 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111111111-11111-1-1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 243 STR:RPRED 97.2 SQ:SECSTR ccccHHHHHHHHHHHHHHHHccccccGGGTccccHHHHHHTTcTTcHHHHHTcHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHcTTcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHccccccccHHHHHHcHHHHHHHHHHHccHHHHTTccEEEEEEETTTTEEEEEEEETTEEEEEEEEETcccTTccEEEEccHHHHHHHHTTcccHHHHHHTTccEEcccc####### PSIPRED ccccHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccc //