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Clostridium perfringens str. 13 (cper0)
Gene : CPE1475
DDBJ      :CPE1475      probable transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  767/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:294 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->287 3hhgG PDBj 6e-20 25.0 %
:RPS:PDB   1->107 3bj6A PDBj 3e-22 12.1 %
:RPS:PDB   87->290 1al3A PDBj 1e-31 16.3 %
:RPS:SCOP  1->104 1b9mA1  a.4.5.8 * 2e-24 16.3 %
:RPS:SCOP  87->291 1i69A  c.94.1.1 * 9e-40 18.6 %
:HMM:SCOP  1->112 1b9mA1 a.4.5.8 * 1.1e-23 38.1 %
:HMM:SCOP  81->292 1uthA_ c.94.1.1 * 1.7e-42 25.6 %
:RPS:PFM   4->62 PF00126 * HTH_1 4e-07 37.3 %
:RPS:PFM   90->292 PF03466 * LysR_substrate 1e-28 27.1 %
:HMM:PFM   87->291 PF03466 * LysR_substrate 1.3e-48 29.8 205/209  
:HMM:PFM   3->62 PF00126 * HTH_1 6e-20 40.0 60/60  
:BLT:SWISS 5->280 RBCR_CYAME 2e-41 34.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81181.1 GT:GENE CPE1475 GT:PRODUCT probable transcriptional regulator GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1731671..1732555) GB:FROM 1731671 GB:TO 1732555 GB:DIRECTION - GB:GENE CPE1475 GB:PRODUCT probable transcriptional regulator GB:NOTE 294 aa, similar to sp:YEIE_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN LYSP-NFO INTERGENIC REGION from Escherichia coli (293 aa); 34.7% identity in 285 aa overlap. 1 putative transmembrane region was found by PSORT LysR-family GB:PROTEIN_ID BAB81181.1 LENGTH 294 SQ:AASEQ MNFRKLKIFFETAKCLNMTKVAKSMYISQPSISQAIAELESDLDVKLFDRIGKRLYLTHEGEVYFEYSRRILNLYEEANSTIRSSKEGQKGKIVIGASTTIGIYILPELIKEFNELHKNIEISLIIENTQLIEELIMENKVDIALVEGYVKSDELEVFDIGKDELIFIANPNNPIFSKDKITLKDLEDEKFIMREPGSGTREIIENYLINKGCNYNVYMELGNTEAIVRVVETGLGIACVSCKAIDERINEGLIKEIKIDDIKVSRDLYLIYHKDKFISKNLEIFIDKIKSSDI GT:EXON 1|1-294:0| BL:SWS:NREP 1 BL:SWS:REP 5->280|RBCR_CYAME|2e-41|34.8|276/303| BL:PDB:NREP 1 BL:PDB:REP 2->287|3hhgG|6e-20|25.0|280/294| RP:PDB:NREP 2 RP:PDB:REP 1->107|3bj6A|3e-22|12.1|107/149| RP:PDB:REP 87->290|1al3A|1e-31|16.3|203/237| RP:PFM:NREP 2 RP:PFM:REP 4->62|PF00126|4e-07|37.3|59/60|HTH_1| RP:PFM:REP 90->292|PF03466|1e-28|27.1|203/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 87->291|PF03466|1.3e-48|29.8|205/209|LysR_substrate| HM:PFM:REP 3->62|PF00126|6e-20|40.0|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->104|1b9mA1|2e-24|16.3|104/122|a.4.5.8| RP:SCP:REP 87->291|1i69A|9e-40|18.6|199/206|c.94.1.1| HM:SCP:REP 1->112|1b9mA1|1.1e-23|38.1|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 81->292|1uthA_|1.7e-42|25.6|211/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 8468 OP:NHOMOORG 789 OP:PATTERN ----------1--1---------1-----------11111111----------1-------------- 57638223777321C6511-13223F11111223336FQP-324522211117851-1--314-45H7B93-333122224A6211112221-211---11711-61215---------------1---1----1-36634---317327445343311111136398651111111111111121----163HEEEEEFEE7DCEFFEC7ECFJECG244C552788876Qf2446666466554668466A46546743634GI448756444653533412221222111111112123233332333331213322224-55DG666678646539994223B411287821GH552312633221-24122533211111D6RJP56C9JBA8BCBBA9CAABI-79F78R6JFN31fOOJIQEYXNOMUP763ABKBAAE7GHA9AAAAAA7BAB5368-----------------------------1-7C22KvjVmmssxwrIGHHEll*uLKLLEL*c*jwum14XRICIEDDmKe9kNANA5635G644444244335EEA341524123A223-524636451666564134-22-1111-1---------13222BAFAKDBCX8MJDGEGGFBKGMGHGKIGKHQP1-134481-----MJRMCNLMONJMJJIOL-OLLNOJINKMOJOKKLLKKdiYPRAFGOGMJLOONOMMKPKJLWHJHIIIJ6-GDDDDECBEECD--16121128A8936LFn666657377765564QQPMSBL6AAP8WYUXWlhpKgljcDRSR5522245257DKNTHGHHGNSRIIBCCCECD55421111-4222------------1-------------------------------------361 -------------4------------------------------------------------------------------------------------------------------------------------------------------------9----1------5--1-1--------12--8-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 293 STR:RPRED 99.7 SQ:SECSTR EcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccccccccHEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTcccEEEEEEEEcHHHHHHTcHHHHHHHHHHcTEEEEEEEEccHHHHHHHHHTTcccEEEEcccccTTccEEEEEEEEcEEEEEcTTcTTTTTccccHHHHHTcEEEEEcTTcTTHHHHHHHHHHHTcccEEEEEEccHHHHHHHHHHTccEEEEEGGGccTTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHccTT# DISOP:02AL 84-87| PSIPRED ccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEcccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEEEEEEccccccccEEEEEEcccEEEEEcccccccccccccHHHHccccEEEEcccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHcccHHHHHHHHHHHHHccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHccc //