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Clostridium perfringens str. 13 (cper0)
Gene : CPE1504
DDBJ      :CPE1504      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  93/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.52.1
:337 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   161->336 2ae0X PDBj 3e-25 22.5 %
:RPS:SCOP  241->335 2g5dA1  b.52.1.4 * 8e-24 29.7 %
:RPS:PFM   161->208 PF07501 * G5 3e-05 45.8 %
:RPS:PFM   277->336 PF06725 * 3D 3e-18 71.7 %
:HMM:PFM   276->337 PF06725 * 3D 9.4e-27 66.1 62/75  
:HMM:PFM   40->80 PF03990 * DUF348 6.2e-15 41.5 41/43  
:HMM:PFM   96->135 PF03990 * DUF348 2.5e-10 32.5 40/43  
:HMM:PFM   150->227 PF07501 * G5 3.1e-20 48.7 78/79  
:BLT:SWISS 33->337 YABE_BACSU 3e-37 32.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81210.1 GT:GENE CPE1504 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1755771..1756784) GB:FROM 1755771 GB:TO 1756784 GB:DIRECTION - GB:GENE CPE1504 GB:PRODUCT conserved hypothetical protein GB:NOTE 337 aa, similar to sp:YABE_BACSU HYPOTHETICAL 47.7 KDA PROTEIN IN METS-KSGA INTERGENIC REGION from Bacillus subtilis (437 aa); 33.8% identity in 305 aa overlap. 1 putative transmembrane region was found by PSORT GB:PROTEIN_ID BAB81210.1 LENGTH 337 SQ:AASEQ MVNIKKLFSKENRNKTLALGLTGLVLVGGIVVFSMRKTLNVVVNGERTEIVTYKGTVQGALHDNGITLAPKDKVTPSLESKISKNETITINKAVNVKVKTEDGEKEIVSAEDNVEDMLKSEGISFDDDDKILPDKKESLKDGMNVEVVKVDVKKVTEVHPIEFTTEVKKDESKPQTYTEVLNDGQDGEKKVTRELVYENGKEVSNNVIQELVVKEPVNKEVVKGTKETQTLSRGGESINFKKKLSVKSTAYNHPLGSAEAYTASGMHVLRDPNGYSTIAVDPSVIPLGTKLYVEGYGYAIAADTGGAIKGNRVDLFFNTEAEASNWGVRNLDVYILN GT:EXON 1|1-337:0| BL:SWS:NREP 1 BL:SWS:REP 33->337|YABE_BACSU|3e-37|32.2|304/437| TM:NTM 1 TM:REGION 17->35| SEG 19->32|lgltglvlvggivv| SEG 145->158|vevvkvdvkkvtev| SEG 210->223|elvvkepvnkevvk| RP:PDB:NREP 1 RP:PDB:REP 161->336|2ae0X|3e-25|22.5|151/335| RP:PFM:NREP 2 RP:PFM:REP 161->208|PF07501|3e-05|45.8|48/78|G5| RP:PFM:REP 277->336|PF06725|3e-18|71.7|60/70|3D| HM:PFM:NREP 4 HM:PFM:REP 276->337|PF06725|9.4e-27|66.1|62/75|3D| HM:PFM:REP 40->80|PF03990|6.2e-15|41.5|41/43|DUF348| HM:PFM:REP 96->135|PF03990|2.5e-10|32.5|40/43|DUF348| HM:PFM:REP 150->227|PF07501|3.1e-20|48.7|78/79|G5| GO:PFM:NREP 4 GO:PFM GO:0016787|"GO:hydrolase activity"|PF07501|IPR011098| GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF06725|IPR010611| GO:PFM GO:0009254|"GO:peptidoglycan turnover"|PF06725|IPR010611| GO:PFM GO:0019867|"GO:outer membrane"|PF06725|IPR010611| RP:SCP:NREP 1 RP:SCP:REP 241->335|2g5dA1|8e-24|29.7|91/382|b.52.1.4| OP:NHOMO 252 OP:NHOMOORG 93 OP:PATTERN -------------------------------------------------------------------- --------111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-223666665563665666424433665222343422222233--------------------1----------------1----------------------------------------------------11122222222222212221333-22-22--32321212--1211111------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 151 STR:RPRED 44.8 SQ:SECSTR ################################################################################################################################################################HHccEEEEcccccccEEEEEEEEcccccccHHHHHHHTcGGGccHHHHH###################HHHHTc##cHHHHHHHHTTccccEEEEcccccccTTcccc####cTTcEEEccTTTccTTcEEEEEEEEEEEEEEccTTccTTcEEEEEEEcHHHHccccEEEEEEEE# DISOP:02AL 1-2, 173-185, 197-240| PSIPRED cccHHHHHEEccccEEEEEEccEEEEEccEEEEEEccEEEEEEccEEEEEEEEHHHHHHHHHHHccEEccccEEEEccccEEccccEEEEEEcEEEEEEEccEEEEEEEcHHHHHHHHHHcccccccccEEEcccccccccccEEEEEEEEEEEEEEEEEEccccEEEEccccccccEEEEcccccccEEEEEEEEEEccHHHHHHHHccccccccccEEEEcccccccccccccccccccEEEEEEccccccccccccccccccEEcccccccEEEEEEccEEEEccEEEEEccccEEEEEEEcccccccEEEEEEccHHHHHHcccEEEEEEEEc //