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DDBJ      :CPE1507      probable endo-1,4-beta-xylanase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  189/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]

c.6.2

:320 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   82->302 2w3zA PDBj 4e-29 36.8 %
:RPS:PDB   110->318 2cc0A PDBj 1e-22 25.3 %
:RPS:SCOP  83->317 1ny1A  c.6.2.3 * 2e-30 26.4 %
:HMM:SCOP  99->318 2iw0A1 c.6.2.3 * 2e-40 32.8 %
:RPS:PFM   111->208 PF01522 * Polysacc_deac_1 3e-10 38.2 %
:HMM:PFM   109->227 PF01522 * Polysacc_deac_1 7.2e-23 30.3 109/124  
:BLT:SWISS 110->317 XY11A_PSEXY 1e-15 32.0 %
:PROS 207->213|PS00307|LECTIN_LEGUME_BETA
:TM
:SEG

SeqInfo   AminoSeq     See neighboring genes

Links GIB  DAD                                            Abbreviations  Back to title page

GT:ID          BAB81213.1
GT:GENE        CPE1507
GT:PRODUCT     probable endo-1,4-beta-xylanase
GT:DATABASE    GIB00075CH01
GT:ORG         cper0
GB:ACCESSION   GIB00075CH01
GB:LOCATION    complement(1760330..1761292)
GB:FROM        1760330
GB:TO          1761292
GB:DIRECTION   -
GB:GENE        CPE1507
GB:PRODUCT     probable endo-1,4-beta-xylanase
GB:NOTE        320 aa, similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis> (282 aa); 32.3% identity in 192 aa overlap. Putative N-terminal signal sequence was found by PSORT
GB:PROTEIN_ID  BAB81213.1
LENGTH         320
SQ:AASEQ       MSKETLSKRKKKNLEKKYIRRRIGVVLIAIVALVFLGTRIALNHKVEVAKGNTGDEGENKELVMEEATVELPQYKSTDIVPGRNVTFDGKNYAVNVKDVSKMVEGSYEGNEKYVFLTFDDGPSPLTEQVLDILKNENVKGTFFMLGSRLDSGQAPKESLKRAIEEGNAIANHSYSHNFKKLYPGNITDVNYFMDEFRKTNDIMRDVLGVEFDTNVLRMPGGYNSRVYYKDRNLEELDNNLESNKIVSIDWNALNGDAEGKPYTLNEMIDYVKRTSRGKNQVVLLMHDTFGKEKTVKVLPEIIKYYKEEGYEFKTISDANV
GT:EXON        1|1-320:0|
BL:SWS:NREP    1
BL:SWS:REP     110->317|XY11A_PSEXY|1e-15|32.0|181/602|
PROS           207->213|PS00307|LECTIN_LEGUME_BETA|PDOC00278|
TM:NTM         1
TM:REGION      23->45|
SEG            8->17|krkkknlekk|
SEG            19->37|irrrigvvliaivalvflg|
SEG            232->241|nleeldnnle|
SEG            303->313|kyykeegyefk|
BL:PDB:NREP    1
BL:PDB:REP     82->302|2w3zA|4e-29|36.8|209/238|
RP:PDB:NREP    1
RP:PDB:REP     110->318|2cc0A|1e-22|25.3|182/192|
RP:PFM:NREP    1
RP:PFM:REP     111->208|PF01522|3e-10|38.2|89/123|Polysacc_deac_1|
HM:PFM:NREP    1
HM:PFM:REP     109->227|PF01522|7.2e-23|30.3|109/124|Polysacc_deac_1|
GO:PFM:NREP    2
GO:PFM         GO:0005975|"GO:carbohydrate metabolic process"|PF01522|IPR002509|
GO:PFM         GO:0016810|"GO:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"|PF01522|IPR002509|
RP:SCP:NREP    1
RP:SCP:REP     83->317|1ny1A|2e-30|26.4|212/235|c.6.2.3|
HM:SCP:REP     99->318|2iw0A1|2e-40|32.8|201/0|c.6.2.3|1/1|Glycoside hydrolase/deacetylase|
OP:NHOMO       461
OP:NHOMOORG    206
OP:PATTERN     --------------------------------------------------11---------------- -2--1----------1111-1-111-111111---------------------1---------1--------111----212------1112--------122---11-1-------------------------------111--21--11-1---------1-1-2241--------------------1137676778857778962244537791-152-2-111-226--------------------2---11---------11------1-----111111111111111111-------------111---1111124794444444545-8553555321-1-122-2232-1121--111--1---------------------1--------------------1------------------12------------------------------------------------------111----1------------11--------------1--------------------------------------------1-------1--111--1------------------------------------------------1-----1111-------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111-----------------------------1-------------------------1--11--1 ------------651--------------------1--------------1111112----------------------------------1-----------311--------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED      237
STR:RPRED      74.1
SQ:SECSTR      #################################################################################TccccTGTcccccccccccTTcccccTcccEEEEEEEEccccTTHHHHHHHHHHTTcccEEEEcHHHHHHcHHHHHHHHHHHHTTcEEEEccccccGGGccHHHHHcHHHHHHHHHHHHHHHHHTTcccccccEEccGGGcccHHHHHHHccccEEcHHHHTTcEEcccccTTccEEccGGGTccHHHHHHHHHTccTTcEEEEEcccccHHHHHHHHHHHHHHHHTTEEEcEEcTT##
DISOP:02AL     1-12, 50-86|
PSIPRED        ccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccHHccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEcccccc
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