Clostridium perfringens str. 13 (cper0)
Gene : CPE1509
DDBJ :CPE1509 conserved hypothetical protein
Swiss-Prot:
Homologs Archaea 0/68 : Bacteria 14/915 : Eukaryota 0/199 : Viruses 0/175 --->[See Alignment]
:472 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM 254->306 PF03703 * DUF304 3e-05 34.0 %
:HMM:PFM 57->136 PF03703 * DUF304 1.2e-15 30.8 78/80
:HMM:PFM 248->329 PF03703 * DUF304 2.1e-15 23.1 78/80
:HMM:PFM 392->449 PF03703 * DUF304 5.9e-05 22.4 58/80
:HMM:PFM 213->267 PF07226 * DUF1422 0.00053 27.3 55/118
:BLT:SWISS 15->471 YDBT_BACSU 1e-18 20.6 %
:TM
:REPEAT 2|56->217|247->395
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81215.1
GT:GENE CPE1509
GT:PRODUCT conserved hypothetical protein
GT:DATABASE GIB00075CH01
GT:ORG cper0
GB:ACCESSION GIB00075CH01
GB:LOCATION complement(1763959..1765377)
GB:FROM 1763959
GB:TO 1765377
GB:DIRECTION -
GB:GENE CPE1509
GB:PRODUCT conserved hypothetical protein
GB:NOTE 472 aa, similar to pir:F69772 hypothetical protein ydbT from Bacillus subtilis (493 aa); 20.4% identity in 457 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT.
GB:PROTEIN_ID BAB81215.1
LENGTH 472
SQ:AASEQ MNFYKKNHWCKIFITFFKLMKNTWPVIIFLALKFNDYIVEITSISIGLILTFSVVKWFNTSILIEENFLIYREGALLKEEMVIPLRSISLIELERNIIYRIFKLRKIKIDSVYPSSKKNAEIIMVLKKKDLESLYGNLSYRMRNLIHDEREINQTLVYNISAVHLILLSMLRNNILLGIGVLYSSIHFMSKIYKGLNQELISFFKNVIEENVISRDTILAIFLSALFLFSILLLIVLIFSVLAILSKYYKFTIYRNNNYLKVEYGLITRRSYSIPMESIHAVKIEQNIINQIFKFYTIKCCVVGYGNSIKEDELIFPLCNEKGYRDILKNLIPEFIFEGEVYRPEKKDLRRFFTIPIQVALYSSIGFFLLTNEIWPLLISVPVVIIERTLLYKNTKIGFGKDLYYVSYKSLNRRQIFIKRSSMEEIRVTSNPLQIRKKLGNFKLRFYSQKKLDWIKLKNLKLEIYDELKKWA
GT:EXON 1|1-472:0|
BL:SWS:NREP 1
BL:SWS:REP 15->471|YDBT_BACSU|1e-18|20.6|441/100|
TM:NTM 6
TM:REGION 11->33|
TM:REGION 37->59|
TM:REGION 160->182|
TM:REGION 219->241|
TM:REGION 287->309|
TM:REGION 360->382|
NREPEAT 1
REPEAT 2|56->217|247->395|
SEG 218->246|ilaiflsalflfsilllivlifsvlails|
RP:PFM:NREP 1
RP:PFM:REP 254->306|PF03703|3e-05|34.0|53/78|DUF304|
HM:PFM:NREP 4
HM:PFM:REP 57->136|PF03703|1.2e-15|30.8|78/80|DUF304|
HM:PFM:REP 248->329|PF03703|2.1e-15|23.1|78/80|DUF304|
HM:PFM:REP 392->449|PF03703|5.9e-05|22.4|58/80|DUF304|
HM:PFM:REP 213->267|PF07226|0.00053|27.3|55/118|DUF1422|
OP:NHOMO 16
OP:NHOMOORG 14
OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------1-1111------------------------------------11---------------------------------------------------------------------------------------111221----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
DISOP:02AL 1-2, 112-119, 135-153, 303-313|
PSIPRED cccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEHHHHHHHHHHHHHHHHEEEEEEEEEEccEEEEEEEEEEEEEEEEcHHHcEEEEEEcHHHHHHHccEEEEEEEccccccccEEEEEEEHHHHHHHHHHHHHcccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEcccEEEEEEEEEEEEEEEEEEccEEEEEEEEcHHHccEEEEEEEEEEEEccccccccEEEEEEccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEccEEEEcccccEEEEEEcccccEEEEEEcccHHHHHHHHHcc
//
[GTOP]
