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Clostridium perfringens str. 13 (cper0)
Gene : CPE1509
DDBJ      :CPE1509      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  14/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:472 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   254->306 PF03703 * DUF304 3e-05 34.0 %
:HMM:PFM   57->136 PF03703 * DUF304 1.2e-15 30.8 78/80  
:HMM:PFM   248->329 PF03703 * DUF304 2.1e-15 23.1 78/80  
:HMM:PFM   392->449 PF03703 * DUF304 5.9e-05 22.4 58/80  
:HMM:PFM   213->267 PF07226 * DUF1422 0.00053 27.3 55/118  
:BLT:SWISS 15->471 YDBT_BACSU 1e-18 20.6 %
:TM
:REPEAT 2|56->217|247->395
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81215.1 GT:GENE CPE1509 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1763959..1765377) GB:FROM 1763959 GB:TO 1765377 GB:DIRECTION - GB:GENE CPE1509 GB:PRODUCT conserved hypothetical protein GB:NOTE 472 aa, similar to pir:F69772 hypothetical protein ydbT from Bacillus subtilis (493 aa); 20.4% identity in 457 aa overlap. Putative N-terminal signal sequence and 3 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB81215.1 LENGTH 472 SQ:AASEQ MNFYKKNHWCKIFITFFKLMKNTWPVIIFLALKFNDYIVEITSISIGLILTFSVVKWFNTSILIEENFLIYREGALLKEEMVIPLRSISLIELERNIIYRIFKLRKIKIDSVYPSSKKNAEIIMVLKKKDLESLYGNLSYRMRNLIHDEREINQTLVYNISAVHLILLSMLRNNILLGIGVLYSSIHFMSKIYKGLNQELISFFKNVIEENVISRDTILAIFLSALFLFSILLLIVLIFSVLAILSKYYKFTIYRNNNYLKVEYGLITRRSYSIPMESIHAVKIEQNIINQIFKFYTIKCCVVGYGNSIKEDELIFPLCNEKGYRDILKNLIPEFIFEGEVYRPEKKDLRRFFTIPIQVALYSSIGFFLLTNEIWPLLISVPVVIIERTLLYKNTKIGFGKDLYYVSYKSLNRRQIFIKRSSMEEIRVTSNPLQIRKKLGNFKLRFYSQKKLDWIKLKNLKLEIYDELKKWA GT:EXON 1|1-472:0| BL:SWS:NREP 1 BL:SWS:REP 15->471|YDBT_BACSU|1e-18|20.6|441/100| TM:NTM 6 TM:REGION 11->33| TM:REGION 37->59| TM:REGION 160->182| TM:REGION 219->241| TM:REGION 287->309| TM:REGION 360->382| NREPEAT 1 REPEAT 2|56->217|247->395| SEG 218->246|ilaiflsalflfsilllivlifsvlails| RP:PFM:NREP 1 RP:PFM:REP 254->306|PF03703|3e-05|34.0|53/78|DUF304| HM:PFM:NREP 4 HM:PFM:REP 57->136|PF03703|1.2e-15|30.8|78/80|DUF304| HM:PFM:REP 248->329|PF03703|2.1e-15|23.1|78/80|DUF304| HM:PFM:REP 392->449|PF03703|5.9e-05|22.4|58/80|DUF304| HM:PFM:REP 213->267|PF07226|0.00053|27.3|55/118|DUF1422| OP:NHOMO 16 OP:NHOMOORG 14 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------1-1111------------------------------------11---------------------------------------------------------------------------------------111221----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-2, 112-119, 135-153, 303-313| PSIPRED cccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEHHHHHHHHHHHHHHHHEEEEEEEEEEccEEEEEEEEEEEEEEEEcHHHcEEEEEEcHHHHHHHccEEEEEEEccccccccEEEEEEEHHHHHHHHHHHHHcccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEcccEEEEEEEEEEEEEEEEEEccEEEEEEEEcHHHccEEEEEEEEEEEEccccccccEEEEEEccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEccEEEEcccccEEEEEEcccccEEEEEEcccHHHHHHHHHcc //