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Clostridium perfringens str. 13 (cper0)
Gene : CPE1610
DDBJ      :CPE1610      probable endo-1,4-beta-xylanase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  201/915 : Eukaryota  13/199 : Viruses  0/175   --->[See Alignment]
c.6.2
:327 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   65->306 2w3zA PDBj 3e-36 40.0 %
:RPS:PDB   102->305 2cc0B PDBj 5e-28 29.8 %
:RPS:SCOP  102->305 1ny1A  c.6.2.3 * 3e-32 32.4 %
:HMM:SCOP  57->303 2j13A1 c.6.2.3 * 7.3e-39 29.9 %
:RPS:PFM   102->224 PF01522 * Polysacc_deac_1 9e-12 40.2 %
:HMM:PFM   99->217 PF01522 * Polysacc_deac_1 1.4e-23 32.1 109/124  
:BLT:SWISS 102->310 XY11A_PSEXY 8e-19 32.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81316.1 GT:GENE CPE1610 GT:PRODUCT probable endo-1,4-beta-xylanase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1881329..1882312) GB:FROM 1881329 GB:TO 1882312 GB:DIRECTION - GB:GENE CPE1610 GB:PRODUCT probable endo-1,4-beta-xylanase GB:NOTE 327 aa, similar to pir:F69829 endo-1,4-beta-xylanase homolog yheN from Bacillus subtilis (282 aa); 31.6% identity in 231 aa overlap. Putative N-terminal signal sequence was found by PSORT GB:PROTEIN_ID BAB81316.1 LENGTH 327 SQ:AASEQ MSKEIFSKRRNSNKNNFFKIFLGVLAIIVLLWGGIKVVTMIGSNLANKASINKEQEEQEKVIRPNPDDVMPGMNITYEADKYAVDAKDVQAMANDTYKGEGKYVFLTFDDGPSNSTEKILNILKDKDVHGTFFVLGSSIGKDSKRQEYLKEELKSGNAIANHSYSHDFKKLYPGNKLKIDSFMDEFNKTNDIMQSILGGEFDCKVLRMPGGYGTRKYYNDPSLKEFDDTLQENGIINVDWNALDGDAEGKPYSTEEMLNYVKKTSKGKNHVVILMHDAAGKEKTVEILPQIIDYYKNEGYEFKVIKNTYKEENNSNQTENNTGKTSK GT:EXON 1|1-327:0| BL:SWS:NREP 1 BL:SWS:REP 102->310|XY11A_PSEXY|8e-19|32.1|184/602| TM:NTM 1 TM:REGION 19->41| SEG 5->21|ifskrrnsnknnffkif| SEG 311->322|eennsnqtennt| BL:PDB:NREP 1 BL:PDB:REP 65->306|2w3zA|3e-36|40.0|230/238| RP:PDB:NREP 1 RP:PDB:REP 102->305|2cc0B|5e-28|29.8|178/192| RP:PFM:NREP 1 RP:PFM:REP 102->224|PF01522|9e-12|40.2|107/123|Polysacc_deac_1| HM:PFM:NREP 1 HM:PFM:REP 99->217|PF01522|1.4e-23|32.1|109/124|Polysacc_deac_1| GO:PFM:NREP 2 GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF01522|IPR002509| GO:PFM GO:0016810|"GO:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"|PF01522|IPR002509| RP:SCP:NREP 1 RP:SCP:REP 102->305|1ny1A|3e-32|32.4|179/235|c.6.2.3| HM:SCP:REP 57->303|2j13A1|7.3e-39|29.9|224/0|c.6.2.3|1/1|Glycoside hydrolase/deacetylase| OP:NHOMO 520 OP:NHOMOORG 214 OP:PATTERN -------------------------------------------------------------------- -11-----------111-------1------1-111---------------------------1---1211-222----212--------11---------221-111-1-----------------------------1--11--21-----11--------1-1-2241------------------1-1238787889968889A84344538891-17-1311111155--------------------2---11---------11------1111111---1111111111111111111-111-1111--11----112479666666655518664555531-1-222-2232-112--1121--1--------------1------111------------------1------------------12------------------------------------------------------111---1--1-------------------------------------------------------------------1---1-------1--111--1------------------------------------------------1----------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-----1111111---------------------------------------------------1-111--- ------------64----1--------------112------------------1-1--------------------------------1----------11-51---------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 247 STR:RPRED 75.5 SQ:SECSTR ###############################################################ccccccTTcccccccTcccccccccccTTcccccTcccEEEEEEEEccccTTHHHHHHHHHHTTcccEEEEcHHHHHHcHHcHHHHHHHHHTTcEEEEccccccccTTccGGGccHHHHHHHHHHHHHHHHHTTcccHHccEEccGGGEcccccccHHHHHHHHHHHHHTTcEEccccccEEcEEccGGGTccHHHHHHHHHTccTTcEEEEEcccccHHHHHHHHHHHHHHHHTTEEEcEEGccHH################# DISOP:02AL 1-3, 46-71, 316-327| PSIPRED ccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccEEEHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccEEEEEEEccccccHHHHHHHHHHccccEEEEEEcHHHHccHHHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEHHHHHcccccccccccccccccc //