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Clostridium perfringens str. 13 (cper0)
Gene : CPE1621
DDBJ      :CPE1621      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  95/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
f.59.1
:268 amino acids
:PSIPRED
:RPS:SCOP  2->178 2qfiA2  f.59.1.1 * 9e-18 16.6 %
:RPS:PFM   2->196 PF01545 * Cation_efflux 8e-05 23.7 %
:HMM:PFM   2->248 PF01545 * Cation_efflux 4.5e-38 24.4 234/285  
:BLT:SWISS 2->193 YDFM_BACSU 3e-07 23.7 %
:TM
:REPEAT 2|10->69|118->177

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81327.1 GT:GENE CPE1621 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1890669..1891475) GB:FROM 1890669 GB:TO 1891475 GB:DIRECTION - GB:GENE CPE1621 GB:PRODUCT conserved hypothetical protein GB:NOTE 268 aa, similar to gpu:AP001508_150 BH0427 gene product from Bacillus haloduran (301 aa); 36.9% identity in 268 aa overlap. Putative N-terminal signal sequence and 4 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB81327.1 LENGTH 268 SQ:AASEQ MILFDGMYSLGGVILSLLALMGSIYINKKDYEKYPFGKKMIEPLIVIIKSLAIFIMCIYSLTGSIKDLINGGNEVQYGYALIYALISTLGCGIAYFFLKKKGKAINSSLINIESSQWLMDALLSMGVLVGFLIANIIKHTEFIWFNRYLDPLMVIICSSVFIKMPIKSFGDGLKELLEFKADDSITLEIDKLVEGIEREYNFEDTITRVSKTGNDLRIEIDFIYNEESNIKALDEMDSLREKIFNSLSHINYEKWLNVSFTKDKKWAI GT:EXON 1|1-268:0| BL:SWS:NREP 1 BL:SWS:REP 2->193|YDFM_BACSU|3e-07|23.7|190/297| TM:NTM 5 TM:REGION 3->25| TM:REGION 44->66| TM:REGION 77->98| TM:REGION 117->139| TM:REGION 141->163| NREPEAT 1 REPEAT 2|10->69|118->177| RP:PFM:NREP 1 RP:PFM:REP 2->196|PF01545|8e-05|23.7|186/282|Cation_efflux| HM:PFM:NREP 1 HM:PFM:REP 2->248|PF01545|4.5e-38|24.4|234/285|Cation_efflux| GO:PFM:NREP 4 GO:PFM GO:0006812|"GO:cation transport"|PF01545|IPR002524| GO:PFM GO:0008324|"GO:cation transmembrane transporter activity"|PF01545|IPR002524| GO:PFM GO:0016020|"GO:membrane"|PF01545|IPR002524| GO:PFM GO:0055085|"GO:transmembrane transport"|PF01545|IPR002524| RP:SCP:NREP 1 RP:SCP:REP 2->178|2qfiA2|9e-18|16.6|169/204|f.59.1.1| OP:NHOMO 108 OP:NHOMOORG 101 OP:PATTERN --------------------------------------11111------------------------- -------------------------------------1----------------------------------------1-----------1---------------11--------------------------------------31-1------------------------------------------------------------1-------------1-------------------------------------------------------------------------------------------------1-----1111111-1---11111--1---------------1--1-------------------1------1-1------------1------------1-11-12----11-1---------------------------1----------------------------------1--------------------------------------------------------------------------------------------------------1--1--------1--------------1---1-------------------------------------------------------------------------------------------------------------11111-111111---------1111-------------------------------------111-1111----11111121111112111111111122----------------------------------------------------------1------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccc //