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Clostridium perfringens str. 13 (cper0)
Gene : CPE1686
DDBJ      :CPE1686      translation initiation factor IF-2
Swiss-Prot:IF2_CLOPE    RecName: Full=Translation initiation factor IF-2;

Homologs  Archaea  68/68 : Bacteria  912/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
a.6.1b.43.3c.20.1c.37.1
:679 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   179->676 1zo1I PDBj e-150 52.8 %
:RPS:PDB   178->669 1darA PDBj 6e-54 13.6 %
:RPS:SCOP  104->141 1nd9A  a.6.1.6 * 1e-09 15.8 %
:RPS:SCOP  179->342 1g7rA4  c.37.1.8 * 2e-41 37.8 %
:RPS:SCOP  320->442 1n0uA1  b.43.3.1 * 2e-15 14.0 %
:RPS:SCOP  461->581 1g7rA3  c.20.1.1 * 1e-26 25.9 %
:RPS:SCOP  579->676 1d1nA  b.43.3.1 * 4e-25 60.2 %
:HMM:SCOP  175->369 1f60A3 c.37.1.8 * 1e-59 39.5 %
:HMM:SCOP  350->434 1g7sA1 b.43.3.1 * 5.2e-28 62.4 %
:HMM:SCOP  454->585 1g7sA3 c.20.1.1 * 2e-38 48.8 %
:HMM:SCOP  579->677 1d1nA_ b.43.3.1 * 7.2e-35 55.6 %
:RPS:PFM   3->49 PF04760 * IF2_N 7e-04 53.3 %
:RPS:PFM   183->337 PF00009 * GTP_EFTU 5e-16 36.8 %
:RPS:PFM   465->569 PF11987 * IF-2 1e-25 60.0 %
:HMM:PFM   180->339 PF00009 * GTP_EFTU 4.7e-44 37.5 160/189  
:HMM:PFM   462->568 PF11987 * IF-2 7.1e-43 64.5 107/109  
:HMM:PFM   1->49 PF04760 * IF2_N 4e-20 57.1 49/54  
:HMM:PFM   102->150 PF04760 * IF2_N 5.7e-17 34.7 49/54  
:HMM:PFM   368->430 PF03144 * GTP_EFTU_D2 7.2e-10 30.6 62/74  
:HMM:PFM   599->666 PF03144 * GTP_EFTU_D2 1.2e-08 32.8 67/74  
:BLT:SWISS 1->679 IF2_CLOPE 0.0 100.0 %
:PROS 629->651|PS01176|IF2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81392.1 GT:GENE CPE1686 GT:PRODUCT translation initiation factor IF-2 GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1961927..1963966) GB:FROM 1961927 GB:TO 1963966 GB:DIRECTION - GB:GENE CPE1686 GB:PRODUCT translation initiation factor IF-2 GB:NOTE 679 aa, similar to sp:IF2_BACST TRANSLATION INITIATION FACTOR IF-2 from Bacillus stearothermophilus (741 aa); 60.8% identity in 574 aa overlap GB:PROTEIN_ID BAB81392.1 LENGTH 679 SQ:AASEQ MSKIRVYELAKELRVPSKVLINVLMDEFGVEVKNHMSVIEDEDAALIKELLAGSEANSELVAEYEAELAEEVNNAAKKKKKRKKGSEDDNLEQDVEVIEIGKTITVKELAEKLNKPVNDVIKTLIFTGVMAAINQEIDFETAEKVAEKYEVAVYEKEEENTLEEFEEETDVEEENLAKRPPIITVMGHVDHGKTSLLDAIRKSKVTSTEAGGITQHIGAYTVEVNGETLTFLDTPGHEAFTAMRARGAQITDVVILVVAADDGIMPQTVEAINHCKAANVPMIVAINKMDREGANPDRVKQELTEHGLVVEDWGGDIIAVPVSAKTRENIDTLLEMVLLTSEMQELKADAGRKAKGTVVEAKLDKGRGAVATLLVQNGTLHMGDSIIVGSTYGRIRAMFDDSGKKIKSAGPSIPVEVLGLSEVPAAGDRFTVVKDEKTARNMAEARKEKIRQESFATSHRVSLEDLYSQIKEGSVKELSVIVKADVQGSVEAIKASLEKLSTDDVKVRVIHGAVGAISETDITLAAASNAIVIGFNVRPDNNAVAASERDGVEVKTYRVIYDAIEDIKSAMIGMLDPEYKEVVLGTAEIRATYKISNVGTIAGGYVLTGKLVRNADVRVIREGIVIFESKLASLKRFKDDVKEVNAGYECGFSVEKFNDIKEGDIIEAYTMEAVQRKEL GT:EXON 1|1-679:0| SW:ID IF2_CLOPE SW:DE RecName: Full=Translation initiation factor IF-2; SW:GN Name=infB; OrderedLocusNames=CPE1686; SW:KW Complete proteome; Cytoplasm; GTP-binding; Initiation factor;Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->679|IF2_CLOPE|0.0|100.0|679/679| GO:SWS:NREP 5 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0005525|"GO:GTP binding"|GTP-binding| GO:SWS GO:0003743|"GO:translation initiation factor activity"|Initiation factor| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 629->651|PS01176|IF2|PDOC00905| SEG 59->84|elvaeyeaelaeevnnaakkkkkrkk| SEG 142->174|aekvaekyevavyekeeentleefeeetdveee| BL:PDB:NREP 1 BL:PDB:REP 179->676|1zo1I|e-150|52.8|498/501| RP:PDB:NREP 1 RP:PDB:REP 178->669|1darA|6e-54|13.6|486/615| RP:PFM:NREP 3 RP:PFM:REP 3->49|PF04760|7e-04|53.3|45/52|IF2_N| RP:PFM:REP 183->337|PF00009|5e-16|36.8|155/183|GTP_EFTU| RP:PFM:REP 465->569|PF11987|1e-25|60.0|105/111|IF-2| HM:PFM:NREP 6 HM:PFM:REP 180->339|PF00009|4.7e-44|37.5|160/189|GTP_EFTU| HM:PFM:REP 462->568|PF11987|7.1e-43|64.5|107/109|IF-2| HM:PFM:REP 1->49|PF04760|4e-20|57.1|49/54|IF2_N| HM:PFM:REP 102->150|PF04760|5.7e-17|34.7|49/54|IF2_N| HM:PFM:REP 368->430|PF03144|7.2e-10|30.6|62/74|GTP_EFTU_D2| HM:PFM:REP 599->666|PF03144|1.2e-08|32.8|67/74|GTP_EFTU_D2| GO:PFM:NREP 4 GO:PFM GO:0003743|"GO:translation initiation factor activity"|PF04760|IPR006847| GO:PFM GO:0006413|"GO:translational initiation"|PF04760|IPR006847| GO:PFM GO:0003924|"GO:GTPase activity"|PF00009|IPR000795| GO:PFM GO:0005525|"GO:GTP binding"|PF00009|IPR000795| RP:SCP:NREP 5 RP:SCP:REP 104->141|1nd9A|1e-09|15.8|38/49|a.6.1.6| RP:SCP:REP 179->342|1g7rA4|2e-41|37.8|156/212|c.37.1.8| RP:SCP:REP 320->442|1n0uA1|2e-15|14.0|121/138|b.43.3.1| RP:SCP:REP 461->581|1g7rA3|1e-26|25.9|116/131|c.20.1.1| RP:SCP:REP 579->676|1d1nA|4e-25|60.2|98/99|b.43.3.1| HM:SCP:REP 175->369|1f60A3|1e-59|39.5|195/239|c.37.1.8|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 350->434|1g7sA1|5.2e-28|62.4|85/101|b.43.3.1|1/1|Translation proteins| HM:SCP:REP 454->585|1g7sA3|2e-38|48.8|125/131|c.20.1.1|1/1|Initiation factor IF2/eIF5b, domain 3| HM:SCP:REP 579->677|1d1nA_|7.2e-35|55.6|99/99|b.43.3.1|2/2|Translation proteins| OP:NHOMO 4695 OP:NHOMOORG 1177 OP:PATTERN 11112111222222221111111311112121111222322332211111322211122221111111 5663643644344455544-4655654444455777577733334442544334443444333446553454566454444543354554432233411444233535554444444333444445555554454445544334454344443333354464344533334436443333423333115534455555555545565555444445554446355555555475555555555555545555545555555635775555563434545544444444444455545545433444444343445544474545657488888884746577355544667755547645355634664453434544447676656555557656666666666566815565555666535555555655677634455555655555555555544444656445333332333434344444444433333545455444422242232222334322221222344542344334333444333243232225333332355521526767435554445544373335344446668554443343323433333336443433332434324532233333366622542222313333233122234223333333333333-33333333333333333344442333333333333333333333333333322323233323333224322222222223333434343434434334222122222334444443432333443333333333331333333333332335532323333333323445567554444444433433334-44444434443443444444323443444234 5611654-G6513554333234444434444444443444354444343334442342344445433314425555412536554445-36537545555433443267674643473422244993428L514663313523544231252163853259A44555766M56567597*A867598AD2B86694555 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 582 STR:RPRED 85.7 SQ:SECSTR ###############################################################################################HHHHTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHTTccTTcccHHHHHHHHHHHTcHHHHHHHTTTEcGGEEEEEEEEcTTccHHHHHHHHHHHHccccEEEEEETTEEEEEEcccccTTEEcTTcTTccHHHHHHHHHHTTcccEEEcEEEEcccEEEETTTTEEEEEccTTcccEEEEcccGGGHHHHHHHHHHHHHHHTTTTccEEEEEccGGGTccHHHHHHHHHccccEEEEcccTTcccEEEEEEEEEETTTEEEEEEEEEEcEEEcccEEEETTTccEEEEEccccEEEEcEEETTcEEEEEcccccccTTcEEEETTcccccccccccccEEEccEEEEEcccccccEEEcTTTcccccccEEEccccEEEEEEEEEccccccEEEEEEEEEEEccTTccEEHHHHHHHTTccTTTccccccEEEEEEEEcccTTTccHHHHHHHHHHHHHHHHHTcccEEEEEEEEEEEEEcTTTTTHHHHHHHHTTccEEEEEEETTEEEEEEEEccEEEETTTcccHHHHHHHHTTTcEEEEEEEEEEEccHHHHHHHHTTEEEEEc## DISOP:02AL 1-2, 13-26, 28-29, 33-96, 449-471, 677-679| PSIPRED cccccHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHcccHHHHHHHcccHHHcccccccccccccEEEccccccHHHHHHHHcccHHHHHHHHHHccEEccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHccccHHccccccEEEEEEEEEccHHHHHHHHHHccHHHHHHcccEEEEEEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHccEEEEEEEccccccccHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHccccccccccEEEEEEEcccccccHHHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEEcEEccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcEEEEcccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHccccEEEEEEccccHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHHccccEEEEEcEEEEEEEccccccccEEEEEEEEEcEEEcccEEEEEEccEEEEEEEEHHHHHccccHHHHHcccEEEEEEEcccEEccccEEEEEEEEEEEcccc //