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Clostridium perfringens str. 13 (cper0)
Gene : CPE1707
DDBJ      :CPE1707      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  40/68 : Bacteria  360/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:281 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->280 1pujA PDBj 6e-71 49.2 %
:RPS:PDB   5->133 1byuA PDBj 3e-06 15.5 %
:RPS:PDB   122->197 2dwqB PDBj 1e-06 28.0 %
:RPS:SCOP  9->280 1pujA  c.37.1.8 * 8e-40 49.2 %
:HMM:SCOP  9->281 1pujA_ c.37.1.8 * 2.6e-42 28.6 %
:HMM:PFM   132->189 PF01926 * MMR_HSR1 2.7e-14 38.9 54/108  
:HMM:PFM   75->122 PF01972 * SDH_sah 0.00058 34.8 46/286  
:BLT:SWISS 1->280 RBGA_BACSU 2e-83 50.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81413.1 GT:GENE CPE1707 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(1986525..1987370) GB:FROM 1986525 GB:TO 1987370 GB:DIRECTION - GB:GENE CPE1707 GB:PRODUCT conserved hypothetical protein GB:NOTE 281 aa, similar to pir:F69880 conserved hypothetical protein ylqF from Bacillus subtilis (282 aa); 50.7% identity in 280 aa overlap GB:PROTEIN_ID BAB81413.1 LENGTH 281 SQ:AASEQ MAINWFPGHMVKTKREIQNNLKLVDAVIEIRDARIPKSSKNPDIDTLCAGKPRVILLNKSDLTDPKVTKAWKDSLTNDETIVLEVNALKGEGLNAIKPALLKLLKEKHDRLKAKGLAKITTRAMVVGIPNVGKSTFINKMAKNNIAKTGDRPGVTKNKQWIKTKLGIELMDTPGVLWPKFEDEIVGLNLAFTGAIKDEIMDTEELALKLVERLQETNPEELMTRYKLTELHENPLDNLDAIARKRGAIMSGNQIDYNRIAGIILDEFRGGKIGKISLEKPE GT:EXON 1|1-281:0| BL:SWS:NREP 1 BL:SWS:REP 1->280|RBGA_BACSU|2e-83|50.7|280/282| BL:PDB:NREP 1 BL:PDB:REP 9->280|1pujA|6e-71|49.2|260/261| RP:PDB:NREP 2 RP:PDB:REP 5->133|1byuA|3e-06|15.5|129/202| RP:PDB:REP 122->197|2dwqB|1e-06|28.0|75/337| HM:PFM:NREP 2 HM:PFM:REP 132->189|PF01926|2.7e-14|38.9|54/108|MMR_HSR1| HM:PFM:REP 75->122|PF01972|0.00058|34.8|46/286|SDH_sah| RP:SCP:NREP 1 RP:SCP:REP 9->280|1pujA|8e-40|49.2|260/261|c.37.1.8| HM:SCP:REP 9->281|1pujA_|2.6e-42|28.6|273/273|c.37.1.8|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1025 OP:NHOMOORG 595 OP:PATTERN --111111111111111-11111------------11111111------1111-1111111---1--- -------------------------------------------------------------------------------------111----------------------------------------------------------1111111111111111111111111111111111111--------1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111-11--1------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1111111111111111111111111---111--1---1--------1-1---111-----1-----------------------------11-1111-1111111111111111111111--------------------------------------------------------------------------------------------------------------1-11----------------------111-1-----------------111111111111111111111111------------------------11111111--111111-11111111111111111111111111111--- 2222332-93313331222333333323322222221333333222223333223332233322322222322332312233333323-232223233-214233314533694456231233256151DQ7-646211243332142334113233435A543433333648432243E3331355643442332331 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 281 STR:RPRED 100.0 SQ:SECSTR TTTTEEEccGGGcccccHHHHTTccEEEEEEETTcHHHHHTHHHHHHHccccEEEEEEcTTcccccccGGGGHHHHHTTcEEEEccGGGTcTTTHHHHHHHHHHHTcTTccEEEccccccccEEEEccccccHHHHHHHHHHHHcTccccEEEEEcccHHHHHHHHHTTTccccEEccEEEEETTTTccHHHHHHHHGGcccHHHHHHHHHHHHHHcHHHHHHHHHHHTccccHHHHHHHHHHHTTcccGGGcccHHHHHHHHHHHHHTTTTcccccccTT DISOP:02AL 280-281| PSIPRED cccccccHHHHHHHHHHHHHHHHccEEEEEEEcccccccccHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHccccEEEccccccEEEEEEEEEccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHEEEEcccccccccHHHHHHHHHHHHcHHHccccccHHHHHHHHHHHHHccccccccccccc //