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Clostridium perfringens str. 13 (cper0)
Gene : CPE1852
DDBJ      :CPE1852      probable cell-division protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  159/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
d.66.1
:253 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   78->136 2fphX PDBj 2e-04 30.5 %
:RPS:PDB   175->219 3dh3B PDBj 2e-06 24.4 %
:RPS:SCOP  176->227 1vioA2  d.66.1.5 * 1e-09 28.8 %
:HMM:SCOP  176->233 1vioA2 d.66.1.5 * 1.7e-07 29.3 %
:HMM:PFM   178->220 PF01479 * S4 1e-08 39.5 43/48  
:HMM:PFM   97->153 PF03880 * DbpA 2.9e-06 26.3 57/74  
:BLT:SWISS 55->248 YLMH_BACSU 8e-19 29.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81558.1 GT:GENE CPE1852 GT:PRODUCT probable cell-division protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2122664..2123425) GB:FROM 2122664 GB:TO 2123425 GB:DIRECTION - GB:GENE CPE1852 GB:PRODUCT probable cell-division protein GB:NOTE 253 aa, similar to pir:H69876 cell-division protein homolog ylmH from Bacillus subtilis (257 aa); 29.4% identity in 194 aa overlap GB:PROTEIN_ID BAB81558.1 LENGTH 253 SQ:AASEQ MNKKDFINLLNLEEFEALKLFERFNLARTKNISVFTDEFYTPDVWSTLQEMNLFDVNVESFGFFEDGERRVIAFNKDEYDLFPISLLRIQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDDGCYVAVHHSIIDFLINNLNKIRNLNCKCEIIYDLDEIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLDYRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTTKSGRLKLTVFKYT GT:EXON 1|1-253:0| BL:SWS:NREP 1 BL:SWS:REP 55->248|YLMH_BACSU|8e-19|29.7|192/100| SEG 140->153|innlnkirnlnckc| BL:PDB:NREP 1 BL:PDB:REP 78->136|2fphX|2e-04|30.5|59/165| RP:PDB:NREP 1 RP:PDB:REP 175->219|3dh3B|2e-06|24.4|45/241| HM:PFM:NREP 2 HM:PFM:REP 178->220|PF01479|1e-08|39.5|43/48|S4| HM:PFM:REP 97->153|PF03880|2.9e-06|26.3|57/74|DbpA| RP:SCP:NREP 1 RP:SCP:REP 176->227|1vioA2|1e-09|28.8|52/58|d.66.1.5| HM:SCP:REP 176->233|1vioA2|1.7e-07|29.3|58/58|d.66.1.5|1/1|Alpha-L RNA-binding motif| OP:NHOMO 181 OP:NHOMOORG 174 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------11111111111------11-11111--1------1----------1111111111111111111111111111111111111111111----------------1-1111-11-1111--111111-1-11111111-11111-----------11111111111111111111111111-111111111111111111111111-1-1-1111--111-1111-11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11118111-11111-11------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 139 STR:RPRED 54.9 SQ:SECSTR #############################################################################cGGGGcEEEEEEEcccccHHHHHHHHHcccccccccGGGEEEEEccccccEEEEEGGGH###################HHHHHTTcccTHHHHHHHHccEEHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEcccHHHTTEEEcccccccc################## PSIPRED ccHHHHHHHHcHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccEEEEEEcccccccEEEEEEcccccccccEEEEEEEcccccccccHHHHHHHHHHccccHHccccEEEEccEEEEEEcHHHHHHHHHHHHHHccEEEEEEEccHHHcccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccEEEcccccEEccccEEEEEcccEEEEEEEccEEEccEEEEEEEEcc //