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Clostridium perfringens str. 13 (cper0)
Gene : CPE1888
DDBJ      :CPE1888      probable transposase
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  175/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.58.57
:123 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->120 2fyxA PDBj 5e-33 49.2 %
:RPS:PDB   2->121 2ec2A PDBj 4e-29 41.2 %
:RPS:SCOP  6->121 2fyxA1  d.58.57.1 * 3e-30 50.0 %
:HMM:SCOP  1->122 2a6oA1 d.58.57.1 * 2e-38 46.7 %
:RPS:PFM   6->119 PF01797 * Transposase_17 1e-20 41.2 %
:HMM:PFM   2->120 PF01797 * Transposase_17 9.8e-44 42.0 119/121  
:BLT:SWISS 5->120 T200_SALTY 2e-16 33.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81594.1 GT:GENE CPE1888 GT:PRODUCT probable transposase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2170390..2170761) GB:FROM 2170390 GB:TO 2170761 GB:DIRECTION - GB:GENE CPE1888 GB:PRODUCT probable transposase GB:NOTE 123 aa, similar to pir:F75335 probable transposase from Deinococcus radiodurans (strain R1) (140 aa); 52.8% identity in 123 aa overlap GB:PROTEIN_ID BAB81594.1 LENGTH 123 SQ:AASEQ MYCIQYHIVWCVKYRRKVLFGDVDKSLKEIILKIANDNNFEISEMETDKDHIHLLIECSPQHQIPNIIKALKGVSARLLFLKHPEIKRYLCGGNLWNPSYFVATVSENTEEQIRNYIQNQQVK GT:EXON 1|1-123:0| BL:SWS:NREP 1 BL:SWS:REP 5->120|T200_SALTY|2e-16|33.9|115/152| BL:PDB:NREP 1 BL:PDB:REP 1->120|2fyxA|5e-33|49.2|120/130| RP:PDB:NREP 1 RP:PDB:REP 2->121|2ec2A|4e-29|41.2|119/130| RP:PFM:NREP 1 RP:PFM:REP 6->119|PF01797|1e-20|41.2|114/119|Transposase_17| HM:PFM:NREP 1 HM:PFM:REP 2->120|PF01797|9.8e-44|42.0|119/121|Transposase_17| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF01797|IPR002686| GO:PFM GO:0004803|"GO:transposase activity"|PF01797|IPR002686| GO:PFM GO:0006313|"GO:transposition, DNA-mediated"|PF01797|IPR002686| RP:SCP:NREP 1 RP:SCP:REP 6->121|2fyxA1|3e-30|50.0|116/130|d.58.57.1| HM:SCP:REP 1->122|2a6oA1|2e-38|46.7|120/0|d.58.57.1|1/1|Transposase IS200-like| OP:NHOMO 1202 OP:NHOMOORG 199 OP:PATTERN --1---1-7224--17--------24431183------------------2HE-----1-1-12---- ---------------------2----------1-----11--35----------------------12--2----1-----1-----1--------8------1----2------------------------3--3---------12A-744E1----------C-18---------------19-------------5------11238-------5---13-------3-------1-11---11-322-1------A--1--JJ---3-----------12--1-2-----1--1---------------4411-222-43-1------2--3-A1---3-E-32-3----332B12--21----2--3-----------------1---1---------------------------------3------------1------------------------------------------B-----------------------------------------------------------1--------------------1--3---41----1-------------3-1-------------------3-7----------1------1-1--228-2-----24--------9--12-------------4---21H-1-111-1---1832-2216-----1---1--8E7--71---4-1R6R71---1------3*rl5***uF2E------------------------------24-------------------------------------------Q47447--------------------------------1--1--------------------------------3-312-2--- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 123 STR:RPRED 100.0 SQ:SECSTR EEccEEEEEEcccccTTcccTHHHHHHHHHHHHHHHHHTcEEEEEEEETTEEEEEEEccTTccHHHHHHHHHHHHHHHHHHTTHHHHHTTTcccccccccEEEEEccccHHHHHHHHHHcccc DISOP:02AL 120-123| PSIPRED ccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHccEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccHHHHHHHHHHHHccc //