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Clostridium perfringens str. 13 (cper0)
Gene : CPE2006
DDBJ      :CPE2006      hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  16/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:295 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   41->166 PF10882 * DUF2679 1e-30 49.2 %
:HMM:PFM   9->294 PF10882 * DUF2679 7e-125 52.4 286/286  
:BLT:SWISS 49->295 Y1301_CLOAB 2e-36 30.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81712.1 GT:GENE CPE2006 GT:PRODUCT hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2296959..2297846) GB:FROM 2296959 GB:TO 2297846 GB:DIRECTION - GB:GENE CPE2006 GB:PRODUCT hypothetical protein GB:NOTE 295 aa, partially similar to sp:YORS_CLOAB HYPOTHETICAL 14.0 KDA PROTEIN IN SIGA 3'REGION (ORF S) from Clostridium acetobutylicum (118 aa); 25.9% identity in 116 aa overlap. Putative N-terminal signal sequence and 4 putative transmembrane regions were found by PSORT. GB:PROTEIN_ID BAB81712.1 LENGTH 295 SQ:AASEQ MTKFKARRGHGVFEVLAYLLLGNALLIILNNIVNGYLERNLVIVSSFVYSIVCIYYILLDLSLVYEVNDDYIEINCFKGLKKFRINFKDVNGFLEQDKVINGFKLSGFGKHKYCFGRCVVHNVGIARMFVTSSKRVIYIHTEDISYGLSPDEFEKFKELIVSKGIKEESFKVKVNNARAIIRDKGFYIPFIITSLLILGIILIPSILYLSGAMPDKMPIDFSAHFIPCTIGSAKDFVGRQIIYGIMNMILLVCIYYASHFCAKYDKKLAQRYIYLSLIISLVFLVSQIQTLVNYL GT:EXON 1|1-295:0| BL:SWS:NREP 1 BL:SWS:REP 49->295|Y1301_CLOAB|2e-36|30.9|246/100| TM:NTM 5 TM:REGION 11->33| TM:REGION 42->64| TM:REGION 188->210| TM:REGION 241->263| TM:REGION 269->291| SEG 15->37|vlaylllgnalliilnnivngyl| SEG 191->210|iitsllilgiilipsilyls| SEG 272->281|yiylsliisl| RP:PFM:NREP 1 RP:PFM:REP 41->166|PF10882|1e-30|49.2|126/140|DUF2679| HM:PFM:NREP 1 HM:PFM:REP 9->294|PF10882|7e-125|52.4|286/286|DUF2679| OP:NHOMO 16 OP:NHOMOORG 16 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1111111-1---111111-1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-7| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEccEEEEEEEccEEEEEEEHHHHHHHHHHccEEEEEEEEEEcccEEEEEEEEEEcccEEEEEEEEcccEEEEEEccEEEcccHHHHHHHHHHHHHccEEEccEEEEEcccEEEEEcccEEccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //