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Clostridium perfringens str. 13 (cper0)
Gene : CPE2022
DDBJ      :CPE2022      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  498/915 : Eukaryota  22/199 : Viruses  0/175   --->[See Alignment]
a.182.1
:149 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->148 1ng6A PDBj 2e-28 42.3 %
:RPS:PDB   5->119 3bmaE PDBj 8e-11 14.4 %
:RPS:SCOP  3->148 1ng6A  a.182.1.1 * 8e-38 40.4 %
:HMM:SCOP  2->148 1ng6A_ a.182.1.1 * 1e-42 41.5 %
:RPS:PFM   5->147 PF09424 * YqeY 8e-24 53.1 %
:HMM:PFM   5->147 PF09424 * YqeY 4.7e-55 53.8 143/143  
:BLT:SWISS 3->148 YQEY_BACSU 7e-28 42.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81728.1 GT:GENE CPE2022 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2314789..2315238) GB:FROM 2314789 GB:TO 2315238 GB:DIRECTION - GB:GENE CPE2022 GB:PRODUCT conserved hypothetical protein GB:NOTE 149 aa, similar to pir:T43743 conserved hypothetical protein orf17 from Listeria monocytogenes (151 aa); 45.2% identity in 146 aa overlap GB:PROTEIN_ID BAB81728.1 LENGTH 149 SQ:AASEQ MPTIKERLQEDWKQALKAKDKFKAGVLSTAKSAILLVEKTDGVKLEDEQVIEILAREIKQRREAALEFEKGNRQDLVDQNNSEIAILLDYLPQQLSEEEIKDIIKQAAEEVGANSMKDMGKVMSKVRPQTVGRADGKLVSQLVKEYLNK GT:EXON 1|1-149:0| BL:SWS:NREP 1 BL:SWS:REP 3->148|YQEY_BACSU|7e-28|42.3|142/148| BL:PDB:NREP 1 BL:PDB:REP 3->148|1ng6A|2e-28|42.3|142/148| RP:PDB:NREP 1 RP:PDB:REP 5->119|3bmaE|8e-11|14.4|111/390| RP:PFM:NREP 1 RP:PFM:REP 5->147|PF09424|8e-24|53.1|143/143|YqeY| HM:PFM:NREP 1 HM:PFM:REP 5->147|PF09424|4.7e-55|53.8|143/143|YqeY| RP:SCP:NREP 1 RP:SCP:REP 3->148|1ng6A|8e-38|40.4|146/148|a.182.1.1| HM:SCP:REP 2->148|1ng6A_|1e-42|41.5|147/148|a.182.1.1|1/1|GatB/YqeY motif| OP:NHOMO 520 OP:NHOMOORG 520 OP:PATTERN -------------------------------------------------------------------- 11---111111-1--1111-1---11111111-11111111--11--------11-------1-1-111111--------111--1111111-111---1111111111----------------111111111111111111111-11-----------------1---1-----------------11-111111111111111111111111111111111111111111--------------------111-11-1111111111111111-----------------------------------------------11111111111111111111111111--1-11-11-1--111111111--1-------1--1-11111111111111111111111-11111111111-111111111111111-1-11111111111111111-----11------------------------------111111-11111-11111111111111111-11111111111111111111111111111111111111111111-11-----111111111111-1111-11111-11111111111-1---------11-111111-1111-1111111111111111111111--111-1--------------------------------------------------------------------------------------------1111-11111111-1---------------1111111111-11111-------------11111111111111111111111111111111111111--1-111111------------------------------------1111-11111111 ------------111--1------------------1------------1-1-1111--111-------------------------1-1---1---------111----------------------------------------------------------------------11--------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 146 STR:RPRED 98.0 SQ:SECSTR ##cHHHHHHccccHHHHHHHHHHHHHcTTcTTHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHTHHHHTHHGGTccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHTTTccHHHHHHHHHHHcc# DISOP:02AL 148-149| PSIPRED ccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcc //