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Clostridium perfringens str. 13 (cper0)
Gene : CPE2025
DDBJ      :CPE2025      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  67/68 : Bacteria  791/915 : Eukaryota  104/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.1.28c.92.1
:434 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   144->334 2qgqA PDBj 9e-18 32.8 %
:RPS:PDB   3->278 3cl5A PDBj 2e-38 8.5 %
:RPS:PDB   259->358 3dcxA PDBj 7e-15 9.1 %
:RPS:SCOP  132->383 1qgoA  c.92.1.2 * 2e-32 11.3 %
:RPS:SCOP  366->433 1yezA1  b.40.4.12 * 4e-04 19.0 %
:HMM:SCOP  128->361 1oltA_ c.1.28.2 * 2.9e-57 32.1 %
:RPS:PFM   3->95 PF00919 * UPF0004 3e-12 38.7 %
:RPS:PFM   146->305 PF04055 * Radical_SAM 7e-10 39.2 %
:HMM:PFM   147->318 PF04055 * Radical_SAM 4.6e-31 34.0 159/166  
:HMM:PFM   2->97 PF00919 * UPF0004 2e-28 42.7 96/98  
:HMM:PFM   372->433 PF01938 * TRAM 6.4e-06 29.3 58/61  
:BLT:SWISS 3->433 YQEV_BACSU e-102 43.1 %
:PROS 146->166|PS01278|MTTASE_RADICAL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81731.1 GT:GENE CPE2025 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2315997..2317301) GB:FROM 2315997 GB:TO 2317301 GB:DIRECTION - GB:GENE CPE2025 GB:PRODUCT conserved hypothetical protein GB:NOTE 434 aa, similar to gp:AF036764_3 unknown from Clostridium acetobutylicum (386 aa); 63.2% identity in 386 aa overlap GB:PROTEIN_ID BAB81731.1 LENGTH 434 SQ:AASEQ MKVAFATLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIGRARRQNPEAIIAVVGCYAQIAPTEVSGIEGVDVVLGSRNKGEIVYYVNKARDEGKQQVKVGAVLKNKVFEDLKIEEYNNKTRAFLKIQDGCNRFCAYCLIPYTRGSVCSKDPKKVLDEIRSLAEHGFKEIILSGIHTASYGVDLDEKVTLVDLLEEIEKIDGIERVRIGSIDPTFFTEDVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKIEDVSITTDVIVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNKKDERSKKLIELNRINEKAFAEKYIGEVIDVLFEEEVELGSGVYTGYTRNYIKVNAKADCNVSGKILNVKINSFEGEVAEGEIVL GT:EXON 1|1-434:0| BL:SWS:NREP 1 BL:SWS:REP 3->433|YQEV_BACSU|e-102|43.1|429/451| PROS 146->166|PS01278|MTTASE_RADICAL|PDOC00984| SEG 306->317|etdeefeetyef| BL:PDB:NREP 1 BL:PDB:REP 144->334|2qgqA|9e-18|32.8|174/266| RP:PDB:NREP 2 RP:PDB:REP 3->278|3cl5A|2e-38|8.5|271/358| RP:PDB:REP 259->358|3dcxA|7e-15|9.1|99/114| RP:PFM:NREP 2 RP:PFM:REP 3->95|PF00919|3e-12|38.7|93/97|UPF0004| RP:PFM:REP 146->305|PF04055|7e-10|39.2|143/164|Radical_SAM| HM:PFM:NREP 3 HM:PFM:REP 147->318|PF04055|4.6e-31|34.0|159/166|Radical_SAM| HM:PFM:REP 2->97|PF00919|2e-28|42.7|96/98|UPF0004| HM:PFM:REP 372->433|PF01938|6.4e-06|29.3|58/61|TRAM| GO:PFM:NREP 5 GO:PFM GO:0003824|"GO:catalytic activity"|PF00919|IPR013848| GO:PFM GO:0009451|"GO:RNA modification"|PF00919|IPR013848| GO:PFM GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|PF00919|IPR013848| GO:PFM GO:0003824|"GO:catalytic activity"|PF04055|IPR007197| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF04055|IPR007197| RP:SCP:NREP 2 RP:SCP:REP 132->383|1qgoA|2e-32|11.3|231/257|c.92.1.2| RP:SCP:REP 366->433|1yezA1|4e-04|19.0|63/68|b.40.4.12| HM:SCP:REP 128->361|1oltA_|2.9e-57|32.1|224/0|c.1.28.2|1/1|Radical SAM enzymes| OP:NHOMO 2015 OP:NHOMOORG 962 OP:PATTERN 1111111111111111111111111111-111111111112111111111111111111111111111 2331311111111111111-111121111111111111112222211211111111111122222222222111111133331333333333233322233333333313-------22222223333333333332222222222222222222222222222222222222212222212222233333222222222222222222222222222222221-------3222222222222222222221----------------------------------------------------------------------33333333333333343333333333222332333334334333333321233212223323333332233333333333323333-3333333323212222222222223333233333333332222222222222333111222222222222222222222222221333332222222222222222222222222222222222222222222222222222222222111111122222233333333333333333333333322322233333333333333333333333333322222222212112222211122221211211111121211111122222112222222222-2222222222222222222222221122222222222222222122122221-111111111111---31111122223121122222222112222222222222222222221222211112222211122121211112222211122222222222211111133333333--------32-------------------2------3333333333222 1111112-1-11111----------------------------------------------------------------------------------------111-131462222-2222212322518M3-52612-1411222212121242223111523212222142523334T444442223-243342223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 421 STR:RPRED 97.0 SQ:SECSTR cTccccccEEccEEEEEccTTcTcGGGcccccTTccHHHHHHHHHHHHHHHHHHHHTTEEcEEEEEEccEEEcccccEETTEEcccccTTcccccccEEEEEEEEEEEEEEEEEcccEEETTEEEccEEEEEETTTccEEEEEccccccccccEEEEEEEEEEEEEEHHEEEEEccEEEccEEEEEEEEcccccEEEEcccccTTcccccHHHHHccTTTEEEEcccccEEEETTEEEHHHHHHHGGGGEEETTEEEcccccccccccccEEccccccTccHHHHHHHHHHTTccccccccccccccHHHHHHHHHHHHHHTccccEEEcccccTTccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHTccTTTTcHHHHTTcGEEEcccHHHHHHHHHHHHHHHHTTcHHHHHHHccHH############# PSIPRED cEEEEEEccccccHHHHHHHHHHHHHccccccccHHHccEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHccccccEEEccccHHHHHHHHHHHHcccccEEccccccccccccccccccccccEEEEEEEccccccccEEEEEEEEEccEEEccHHHHHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHccccEEEEEEccccccHHHHHHHcccccHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccEEEEEcccccEEEEcccccccccEEEEEEEEEEccEEEEEEEc //