Clostridium perfringens str. 13 (cper0)
Gene : CPE2026
DDBJ :CPE2026 conserved hypothetical protein
Swiss-Prot:
Homologs Archaea 0/68 : Bacteria 709/915 : Eukaryota 10/199 : Viruses 0/175 --->[See Alignment]
b.122.1
c.116.1
:250 amino acids
:SECSTR
:PSIPRED
:BLT:PDB 18->242 1vhkA PDBj 2e-26 37.7 %
:RPS:PDB 1->240 2egvA PDBj 6e-58 31.0 %
:RPS:SCOP 1->71 1nxzA1 b.122.1.2 * 1e-10 18.3 %
:RPS:SCOP 73->247 1nxzA2 c.116.1.5 * 4e-52 33.3 %
:HMM:SCOP 1->71 1nxzA1 b.122.1.2 * 5.1e-16 31.0 %
:HMM:SCOP 72->250 1nxzA2 c.116.1.5 * 5.6e-54 48.3 %
:RPS:PFM 18->240 PF04452 * Methyltrans_RNA 1e-41 40.2 %
:HMM:PFM 17->241 PF04452 * Methyltrans_RNA 1.1e-78 46.6 221/225
:BLT:SWISS 18->249 RSME_BACSU 3e-31 34.5 %
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81732.1
GT:GENE CPE2026
GT:PRODUCT conserved hypothetical protein
GT:DATABASE GIB00075CH01
GT:ORG cper0
GB:ACCESSION GIB00075CH01
GB:LOCATION complement(2317301..2318053)
GB:FROM 2317301
GB:TO 2318053
GB:DIRECTION -
GB:GENE CPE2026
GB:PRODUCT conserved hypothetical protein
GB:NOTE 250 aa, similar to gp:AF036764_2 unknown from Clostridium acetobutylicum (250 aa); 57.6% identity in 250 aa overlap
GB:PROTEIN_ID BAB81732.1
LENGTH 250
SQ:AASEQ MHKFFTPAHMFSDTHAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIALEACKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDSIKNVGIMVGPEGGFEESEIEALKEKGAHIVTLGPRILRTETAGFTCISLIQYELGDLGGNI
GT:EXON 1|1-250:0|
BL:SWS:NREP 1
BL:SWS:REP 18->249|RSME_BACSU|3e-31|34.5|229/256|
SEG 43->55|leseeflgeveev|
BL:PDB:NREP 1
BL:PDB:REP 18->242|1vhkA|2e-26|37.7|207/231|
RP:PDB:NREP 1
RP:PDB:REP 1->240|2egvA|6e-58|31.0|226/229|
RP:PFM:NREP 1
RP:PFM:REP 18->240|PF04452|1e-41|40.2|219/225|Methyltrans_RNA|
HM:PFM:NREP 1
HM:PFM:REP 17->241|PF04452|1.1e-78|46.6|221/225|Methyltrans_RNA|
GO:PFM:NREP 2
GO:PFM GO:0006364|"GO:rRNA processing"|PF04452|IPR006700|
GO:PFM GO:0008168|"GO:methyltransferase activity"|PF04452|IPR006700|
RP:SCP:NREP 2
RP:SCP:REP 1->71|1nxzA1|1e-10|18.3|71/72|b.122.1.2|
RP:SCP:REP 73->247|1nxzA2|4e-52|33.3|168/174|c.116.1.5|
HM:SCP:REP 1->71|1nxzA1|5.1e-16|31.0|71/72|b.122.1.2|1/1|PUA domain-like|
HM:SCP:REP 72->250|1nxzA2|5.6e-54|48.3|172/174|c.116.1.5|1/1|alpha/beta knot|
OP:NHOMO 737
OP:NHOMOORG 719
OP:PATTERN -------------------------------------------------------------------- 111--111111-11-----------1-----------1-----1--1-11111111-1----11----1111111111-11-11111111---111---1-111111111--------------11111111111111111---11111111--111------111111111-1-111---111-11-111111111111111111111111111111111111111111111111111111111111111111-1-11-1-----111111111-1111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111-11111-211111-111111-11--1----1----------1-11-11---11-11111111111111111--11-----1111111111-111-11---1--111--11111111-11-1111-11111111111111--1-1111111111111111111-111111111111111111111111111111111111111111121111111111-1111111121----2-11---------------------------1-1111111111111111111111111111--111111--11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111--111-1111111112111111111111111112122222-11112222111111211112111111111111111111111111111111111111111-12-111111111-1-----1----1-11-11--1111-1-11111-11--11111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----11---1111-11--1---- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 247
STR:RPRED 98.8
SQ:SECSTR ccEEEcccEcTETTEEEEETHHHHHHHHHTTccTTccEEEEETTEEEEEEEEEEEcccEEEEEEEEEcccccccccEEEEEEEccccTHHHHHHHHHHHHTccEEEEEEcTTccccHHHHHHHHHHHHHHHHHHHHHHTcccccEEcccEEGGGccccccEEEEEcTTcccccGEEHHHHccHGGccTTccEEEEEEccTTcccHHHHHHHHHTTcEEEccccccccHHHHHHHHHHHHHGGGTcTT###
PSIPRED ccEEcccHHHccccEEEEcHHHHHHHHHHcccccccEEEEEEccccEEEEEEEEEcccEEEEEEEEcccccccccccEEEEEEEccccHHHHHHHHHHHccccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHcccccEEEEEccccccccHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccc
//
[GTOP]
