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Clostridium perfringens str. 13 (cper0)
Gene : CPE2026
DDBJ      :CPE2026      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  709/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
b.122.1c.116.1
:250 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   18->242 1vhkA PDBj 2e-26 37.7 %
:RPS:PDB   1->240 2egvA PDBj 6e-58 31.0 %
:RPS:SCOP  1->71 1nxzA1  b.122.1.2 * 1e-10 18.3 %
:RPS:SCOP  73->247 1nxzA2  c.116.1.5 * 4e-52 33.3 %
:HMM:SCOP  1->71 1nxzA1 b.122.1.2 * 5.1e-16 31.0 %
:HMM:SCOP  72->250 1nxzA2 c.116.1.5 * 5.6e-54 48.3 %
:RPS:PFM   18->240 PF04452 * Methyltrans_RNA 1e-41 40.2 %
:HMM:PFM   17->241 PF04452 * Methyltrans_RNA 1.1e-78 46.6 221/225  
:BLT:SWISS 18->249 RSME_BACSU 3e-31 34.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81732.1 GT:GENE CPE2026 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2317301..2318053) GB:FROM 2317301 GB:TO 2318053 GB:DIRECTION - GB:GENE CPE2026 GB:PRODUCT conserved hypothetical protein GB:NOTE 250 aa, similar to gp:AF036764_2 unknown from Clostridium acetobutylicum (250 aa); 57.6% identity in 250 aa overlap GB:PROTEIN_ID BAB81732.1 LENGTH 250 SQ:AASEQ MHKFFTPAHMFSDTHAKITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVEEVNKQEVSIKILEKLDVNNESNLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIALEACKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDSIKNVGIMVGPEGGFEESEIEALKEKGAHIVTLGPRILRTETAGFTCISLIQYELGDLGGNI GT:EXON 1|1-250:0| BL:SWS:NREP 1 BL:SWS:REP 18->249|RSME_BACSU|3e-31|34.5|229/256| SEG 43->55|leseeflgeveev| BL:PDB:NREP 1 BL:PDB:REP 18->242|1vhkA|2e-26|37.7|207/231| RP:PDB:NREP 1 RP:PDB:REP 1->240|2egvA|6e-58|31.0|226/229| RP:PFM:NREP 1 RP:PFM:REP 18->240|PF04452|1e-41|40.2|219/225|Methyltrans_RNA| HM:PFM:NREP 1 HM:PFM:REP 17->241|PF04452|1.1e-78|46.6|221/225|Methyltrans_RNA| GO:PFM:NREP 2 GO:PFM GO:0006364|"GO:rRNA processing"|PF04452|IPR006700| GO:PFM GO:0008168|"GO:methyltransferase activity"|PF04452|IPR006700| RP:SCP:NREP 2 RP:SCP:REP 1->71|1nxzA1|1e-10|18.3|71/72|b.122.1.2| RP:SCP:REP 73->247|1nxzA2|4e-52|33.3|168/174|c.116.1.5| HM:SCP:REP 1->71|1nxzA1|5.1e-16|31.0|71/72|b.122.1.2|1/1|PUA domain-like| HM:SCP:REP 72->250|1nxzA2|5.6e-54|48.3|172/174|c.116.1.5|1/1|alpha/beta knot| OP:NHOMO 737 OP:NHOMOORG 719 OP:PATTERN -------------------------------------------------------------------- 111--111111-11-----------1-----------1-----1--1-11111111-1----11----1111111111-11-11111111---111---1-111111111--------------11111111111111111---11111111--111------111111111-1-111---111-11-111111111111111111111111111111111111111111111111111111111111111111-1-11-1-----111111111-1111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111-11111-211111-111111-11--1----1----------1-11-11---11-11111111111111111--11-----1111111111-111-11---1--111--11111111-11-1111-11111111111111--1-1111111111111111111-111111111111111111111111111111111111111111121111111111-1111111121----2-11---------------------------1-1111111111111111111111111111--111111--11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111--111-1111111112111111111111111112122222-11112222111111211112111111111111111111111111111111111111111-12-111111111-1-----1----1-11-11--1111-1-11111-11--11111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----11---1111-11--1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 247 STR:RPRED 98.8 SQ:SECSTR ccEEEcccEcTETTEEEEETHHHHHHHHHTTccTTccEEEEETTEEEEEEEEEEEcccEEEEEEEEEcccccccccEEEEEEEccccTHHHHHHHHHHHHTccEEEEEEcTTccccHHHHHHHHHHHHHHHHHHHHHHTcccccEEcccEEGGGccccccEEEEEcTTcccccGEEHHHHccHGGccTTccEEEEEEccTTcccHHHHHHHHHTTcEEEccccccccHHHHHHHHHHHHHGGGTcTT### PSIPRED ccEEcccHHHccccEEEEcHHHHHHHHHHcccccccEEEEEEccccEEEEEEEEEcccEEEEEEEEcccccccccccEEEEEEEccccHHHHHHHHHHHccccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHcccccEEEEEccccccccHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccc //