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Clostridium perfringens str. 13 (cper0)
Gene : CPE2058
DDBJ      :CPE2058      glutamate decarboxylase
Swiss-Prot:             

Homologs  Archaea  38/68 : Bacteria  160/915 : Eukaryota  178/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:464 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->447 1xeyB PDBj e-122 49.0 %
:RPS:PDB   30->464 2dgkA PDBj 2e-35 47.2 %
:RPS:SCOP  1->445 1pmmA  c.67.1.6 * 2e-28 42.8 %
:HMM:SCOP  2->449 1pmmA_ c.67.1.6 * 7.3e-128 35.1 %
:RPS:PFM   74->380 PF00282 * Pyridoxal_deC 2e-21 34.7 %
:HMM:PFM   53->379 PF00282 * Pyridoxal_deC 4.5e-74 27.1 314/373  
:BLT:SWISS 1->464 DCEB_LISIN 0.0 71.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81764.1 GT:GENE CPE2058 GT:PRODUCT glutamate decarboxylase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2350872..2352266) GB:FROM 2350872 GB:TO 2352266 GB:DIRECTION - GB:GENE CPE2058 GB:PRODUCT glutamate decarboxylase GB:NOTE 464 aa, similar to gp:AB010789_2 glutamate decarboxylase from Lactococcus lactis (466 aa); 70.5% identity in 464 aa overlap GB:PROTEIN_ID BAB81764.1 LENGTH 464 SQ:AASEQ MLFGKNELGSQFETPIFGTVESNESIPKYELAKKSIAPQVAYRLIKDDLLDEGNARQNLCTFCQTYMDDEAVKLMAETLEKNAIDKSEYPQTTDLENRCVNILADLWHAPKDESFMGTSTVGSSEACMLGGMAMKFRWRNRAKALGMDVTSRKPNLVISSGYQVCWEKFCVYWDIEMRLVPMDEEHMSINVDKVLDYVDDYTIGVVGILGITYTGKYDDIKALDKKLEEYNKTAKLTVPMHIDAASGGMFAPFIEPELEWDFRLKNVVSISTSGHKYGLVYPGIGWVLWRDKEYLPQELVFDVSYLGGKIPTMAINFSRSASQIIGQYYNFLRYGFEGYRQIHQRTKDVAMFLASELEKTGLFQIYNNGENLPIVCYKLRDDVNVDWTLYDLADRLLMKGWQVPAYPLPADLQDTIIQRIVCRADLSHNLAELYLRDLKAAIEDLNNARVLNQKSKTGVQGFTH GT:EXON 1|1-464:0| BL:SWS:NREP 1 BL:SWS:REP 1->464|DCEB_LISIN|0.0|71.5|463/464| BL:PDB:NREP 1 BL:PDB:REP 3->447|1xeyB|e-122|49.0|437/449| RP:PDB:NREP 1 RP:PDB:REP 30->464|2dgkA|2e-35|47.2|430/438| RP:PFM:NREP 1 RP:PFM:REP 74->380|PF00282|2e-21|34.7|291/339|Pyridoxal_deC| HM:PFM:NREP 1 HM:PFM:REP 53->379|PF00282|4.5e-74|27.1|314/373|Pyridoxal_deC| GO:PFM:NREP 3 GO:PFM GO:0016831|"GO:carboxy-lyase activity"|PF00282|IPR002129| GO:PFM GO:0019752|"GO:carboxylic acid metabolic process"|PF00282|IPR002129| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00282|IPR002129| RP:SCP:NREP 1 RP:SCP:REP 1->445|1pmmA|2e-28|42.8|437/450|c.67.1.6| HM:SCP:REP 2->449|1pmmA_|7.3e-128|35.1|445/450|c.67.1.6|1/1|PLP-dependent transferases| OP:NHOMO 683 OP:NHOMOORG 376 OP:PATTERN 11--1--1-----------1---31------1111111111111111111221111111111------ ---11---------11111-11--1111111111111211-111----1---1----1--12-----211----------1-------1111-1-------------------------------------------1122-----------1-------1-1-1-------1-----1---------------------1------------------------222321------------------------2--------11----------1-1-------------------------------------------------2222222-2------111--1--1---------------------------1-------------------2-22-11-1------------1----------------1---------------------------------------------------------1----11------------------2222-2--2---1---------------------------------------1--1---1-1---1-------------1------------------------------------------------1------1---2-----------------1--2222222222-2222222222222222222-------1-----------------2122232--1--------------------1111-------------------------------------------------111--11-1-111------1--------------------------------------------------------------------------1-1 ----452-211-11233433333434533333333333333333332322323333332333222-221222222222222223231--24333333222322343-21-2111112111-111221112611113111-2111111-111-11-1111221-2211211-23122-11D1113356673721-4234- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 462 STR:RPRED 99.6 SQ:SECSTR HHHHcHHHHHHHHccTTTcGGGcccccccccccccccHHHHHHHHHHHGGGccccTTcccccccccccHHHHHHHHHTTTccTTcTTTcHHHHHHHHHHHHHHHHHTTccccTTccEEEEccHHHHHHHHHHHHHHHHHHHHHHTTccccccEccEEEEccccHHHHHHHHHTTcEEEEccccTTcccccHHHHHHHccTTEEEEEcccccTTTcccccHHHHHHHHHHHHHHHcccccEEEEcTTGGGTHHHHcTTccccTTcTTEEEEEEETTTTTccccccEEEEEccGGGccGGGcEEEccTTccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccEEEEcTTTcccEEEEEEcTTccccccHHHHHHHHHHTTccccEEEccTTcTTcEEEEEEccTTccHHHHHHHHHHHHHHHHHHHHcGGGTTcccc##ccccc DISOP:02AL 1-13, 25-40, 446-464| PSIPRED cccccccccccccccHHccHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHcccEEEEEEEcccccEEcHHHHHHHHcccccEEEEEcccccEEEEccHHHHHHHHHHHccccccccEEEEEHHHHHHHHHHHccccccccccccccEEEEcccccccccccEEEEEEccHHHccHHHcccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEEEEccccccccccHHHHHHHHHHccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccc //