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Clostridium perfringens str. 13 (cper0)
Gene : CPE2087
DDBJ      :CPE2087      two-component response regulator
Swiss-Prot:             

Homologs  Archaea  25/68 : Bacteria  758/915 : Eukaryota  12/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1c.23.1
:507 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->116 3cu5B PDBj 3e-18 34.2 %
:BLT:PDB   405->502 2k9sA PDBj 3e-08 27.6 %
:RPS:PDB   1->56 2dvyD PDBj 8e-07 7.5 %
:RPS:PDB   31->112 3cwoX PDBj 6e-23 35.4 %
:RPS:PDB   402->503 1bl0A PDBj 3e-26 23.5 %
:RPS:SCOP  3->116 1a0oA  c.23.1.1 * 2e-21 28.6 %
:RPS:SCOP  405->502 1v4aA1  a.24.16.4 * 1e-18 9.2 %
:HMM:SCOP  1->128 1s8nA_ c.23.1.1 * 1.2e-33 37.6 %
:HMM:SCOP  401->454 1d5yA1 a.4.1.8 * 6.2e-09 24.1 %
:HMM:SCOP  455->503 1d5yA2 a.4.1.8 * 5e-11 40.8 %
:RPS:PFM   4->112 PF00072 * Response_reg 5e-19 38.7 %
:RPS:PFM   464->502 PF00165 * HTH_AraC 2e-05 46.2 %
:HMM:PFM   4->116 PF00072 * Response_reg 8.6e-31 35.1 111/112  
:HMM:PFM   418->453 PF00165 * HTH_AraC 1.8e-07 25.0 36/42  
:HMM:PFM   466->502 PF00165 * HTH_AraC 1.3e-12 58.3 36/42  
:HMM:PFM   183->236 PF09893 * DUF2120 0.00027 27.8 54/146  
:BLT:SWISS 1->106,402->502 YESN_BACSU 2e-29 50.0 %
:BLT:SWISS 246->363 MGT_STAAW 1e-04 30.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81793.1 GT:GENE CPE2087 GT:PRODUCT two-component response regulator GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2393660..2395183) GB:FROM 2393660 GB:TO 2395183 GB:DIRECTION - GB:GENE CPE2087 GB:PRODUCT two-component response regulator GB:NOTE 507 aa, similar to gpu:AP001509_231 two-component sensor response regulator from Bacillus halodurans (508 aa); 29.2% identity in 507 aa overlap GB:PROTEIN_ID BAB81793.1 LENGTH 507 SQ:AASEQ MYKVMLADDENLILQGLENIIEWEELGLEIVNKASNGQEAIDKFKENPVDIVVTDINMPQVTGLELLKELKKINSDVKFIILSGYDDFSYAKKAIELGVENYILKPIDEEELEKTLKNTINKIKQEKEENKSSLGKHNILIKLIKGKLAQGEIEENKEGFYMNLNSERYSLCIINTRSRYDSEEMLHNIVNVIKENTQNNFEIIYTLDEELILINSWDEALSKKEIKKYYDKLKEQIINEYGIDVFLSVGEPVCDLYKISSSYKEANNLKKYVLTLGYNKCITTEDVKDINEKNINFSEVLDKLNKRIIAKDIEGAEKIIEETVEDKKLNPRNIYDLSVKILFLLDGIVEEFKVEKQYTGNSLGEEIVALCSEDTREDIKTLLCSEIREVIELMHPTTIKYSPVIQQIISYVNENYYEEVSLKTLAQKYHINTSYLGQVFTKEVGCSFSEYLNKTKNMKAKELILNTNMKINDIAKKVGYLDTSYFYRKFKKYYGVCPSTLRNIKNY GT:EXON 1|1-507:0| BL:SWS:NREP 2 BL:SWS:REP 1->106,402->502|YESN_BACSU|2e-29|50.0|207/368| BL:SWS:REP 246->363|MGT_STAAW|1e-04|30.6|108/269| SEG 117->131|kntinkikqekeenk| SEG 223->235|kkeikkyydklke| BL:PDB:NREP 2 BL:PDB:REP 3->116|3cu5B|3e-18|34.2|114/129| BL:PDB:REP 405->502|2k9sA|3e-08|27.6|98/107| RP:PDB:NREP 3 RP:PDB:REP 1->56|2dvyD|8e-07|7.5|53/214| RP:PDB:REP 31->112|3cwoX|6e-23|35.4|82/236| RP:PDB:REP 402->503|1bl0A|3e-26|23.5|102/116| RP:PFM:NREP 2 RP:PFM:REP 4->112|PF00072|5e-19|38.7|106/111|Response_reg| RP:PFM:REP 464->502|PF00165|2e-05|46.2|39/40|HTH_AraC| HM:PFM:NREP 4 HM:PFM:REP 4->116|PF00072|8.6e-31|35.1|111/112|Response_reg| HM:PFM:REP 418->453|PF00165|1.8e-07|25.0|36/42|HTH_AraC| HM:PFM:REP 466->502|PF00165|1.3e-12|58.3|36/42|HTH_AraC| HM:PFM:REP 183->236|PF09893|0.00027|27.8|54/146|DUF2120| GO:PFM:NREP 7 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 2 RP:SCP:REP 3->116|1a0oA|2e-21|28.6|112/128|c.23.1.1| RP:SCP:REP 405->502|1v4aA1|1e-18|9.2|98/151|a.24.16.4| HM:SCP:REP 1->128|1s8nA_|1.2e-33|37.6|125/190|c.23.1.1|1/1|CheY-like| HM:SCP:REP 401->454|1d5yA1|6.2e-09|24.1|54/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 455->503|1d5yA2|5e-11|40.8|49/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 5182 OP:NHOMOORG 795 OP:PATTERN -----------------------33--2-112---2--1111-14-3A111-4-1-1111-------2 5CG2711211-2-22------4---3------333323321415333211-1331-1-----44554A8A-2---2123--32124547868-8--1--61J6B6K9O97-------1------1---251322B2867DE777G394251111123111322241378C2112111111111231114547AIGGHGGFGIBIHLHIKSZLLGMHMHAGEQC58ABAAAAZ*4666666566666666558394134332222891154244165223696A886877888787888886877667667777A674446666LTGHjKJKJKLJDLCUF8868A7eBE657FF73OOECAA9888B68Q1352H31111111-152612-122553133232333331-11312122121-52213222221-22-1212-1111332--------11121623------------------------------114321---14456551444344895455355464368-122265211325A2245-384841----1-1-126275*iJEBLD5FOFFC3QIPIGMQ6FA9FB9DHHL344112122--1111-11-JF77911648748646435877A6656776685968B--11-13------9345252B99AB88AB9-9ACAAABAAA9AC9ABA97ACA34332AA7799999A68A8786B9866671-666777666767--23444441111238281112-311121-22233444421222588A8689774464578711-1-11-127889AAAAA8DCCC577565422222221-644444443333333363--------------------------15332313234G- ----11-------1------1-----------------------------------------------------------------------------------------------------------------------------------------1--------------1----1-----1M--2-2---2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 259 STR:RPRED 51.1 SQ:SECSTR cEEEEEEcccHHHHHHHHHHHHHHcccEEEEEccccccTTHHHHHHHccccEEEEcccTTccHHHHHHHHHHHcccccEEEEccccTHHHHHHHHHTTccEEEEcHHHHHcTHHHH####################################################################################################################################################################################################################################################HHHHTTcTTccEEEEEEccHHHHHTTcHHHHHHHTTccHHHHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHT#### DISOP:02AL 504-507| PSIPRED ccEEEEEEccHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHEEccHHHEEEEcccEEccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHccc //