[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Clostridium perfringens str. 13 (cper0)
Gene : CPE2092
DDBJ      :CPE2092      probable amino acid ABC transporter
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  909/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:245 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   1->241 2oukB PDBj 3e-73 56.3 %
:RPS:PDB   2->232 3b5jA PDBj 2e-53 26.9 %
:RPS:SCOP  1->240 1b0uA  c.37.1.12 * 3e-61 52.5 %
:HMM:SCOP  1->239 1xew.1 c.37.1.12 * 6e-74 38.4 %
:RPS:PFM   16->47 PF05272 * VirE 4e-04 43.8 %
:RPS:PFM   41->168 PF00005 * ABC_tran 9e-18 47.5 %
:HMM:PFM   41->168 PF00005 * ABC_tran 2.6e-27 36.8 117/118  
:HMM:PFM   5->59 PF03193 * DUF258 5.1e-07 28.6 49/161  
:HMM:PFM   220->231 PF12399 * BCA_ABC_TP_C 0.00057 58.3 12/23  
:BLT:SWISS 1->241 YXEO_BACSU 3e-86 61.4 %
:PROS 140->154|PS00211|ABC_TRANSPORTER_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81798.1 GT:GENE CPE2092 GT:PRODUCT probable amino acid ABC transporter GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2400141..2400878) GB:FROM 2400141 GB:TO 2400878 GB:DIRECTION - GB:GENE CPE2092 GB:PRODUCT probable amino acid ABC transporter GB:NOTE 245 aa, similar to sp:YXEO_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN YXEO from Bacillus subtilis (249 aa); 61.4% identity in 241 aa overlap ATP-binding protein GB:PROTEIN_ID BAB81798.1 LENGTH 245 SQ:AASEQ MIKVKNLKKSYKNLEVLKDVNMEVKQGEVVVIIGPSGSGKSTFLRCLNYLESPDKGEIQVGHVKVNAEKISKKEINDLRKQSAMVFQHYNLFNNKTVLQNVTEALIVVEKMDKKKAEEIALENLKKVGMVDKKDNYPNTLSGGQKQRVSIARAMAINPNVTLFDEPTSALDPELVAEVLAVIKDLAKEHKTMIIVTHEMSFARDVADRVVFMDGGIVLEEGTPEEIFKNPKNERTKQFLERFIVN GT:EXON 1|1-245:0| BL:SWS:NREP 1 BL:SWS:REP 1->241|YXEO_BACSU|3e-86|61.4|241/249| PROS 140->154|PS00211|ABC_TRANSPORTER_1|PDOC00185| BL:PDB:NREP 1 BL:PDB:REP 1->241|2oukB|3e-73|56.3|238/241| RP:PDB:NREP 1 RP:PDB:REP 2->232|3b5jA|2e-53|26.9|227/243| RP:PFM:NREP 2 RP:PFM:REP 16->47|PF05272|4e-04|43.8|32/199|VirE| RP:PFM:REP 41->168|PF00005|9e-18|47.5|120/123|ABC_tran| HM:PFM:NREP 3 HM:PFM:REP 41->168|PF00005|2.6e-27|36.8|117/118|ABC_tran| HM:PFM:REP 5->59|PF03193|5.1e-07|28.6|49/161|DUF258| HM:PFM:REP 220->231|PF12399|0.00057|58.3|12/23|BCA_ABC_TP_C| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| RP:SCP:NREP 1 RP:SCP:REP 1->240|1b0uA|3e-61|52.5|240/258|c.37.1.12| HM:SCP:REP 1->239|1xew.1|6e-74|38.4|229/0|c.37.1.12|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 58206 OP:NHOMOORG 1176 OP:PATTERN XYRCVOKMcbbXbXeTqLUTQUSc*QUntZkXNFFEFFJHIHGVbVXoNV**nAXlWXbRYMLJb2AC VhtT*lkkzz*dgVdXbRQ-QnDDZ*RRRRRQzrss****W*i*z**k*vmT***RYqFF***p******jhggg*jhhQ*oqECECEZZYT9SGKN-1LKaRQSkTgQaABBBABBDDEDDDDLWUPWdSRaaeVqyy**ONO*b*vy*qprfmWXSQRORMnpcr***iPWNPNOOVOOLNogjUS*pCdk*************************nu***sx********hvwvuvrrstvvvsrjoikl*ugn**nVnkw**UU**hdXetuqprxx**zw****z*zyyu**y**hihggijklkigh*xwpnmwvyww***********p*s****jqpn**p***w*WP***qdhmsUbqkzuSkleRgaYYOOQOMRlc***cZw****************-uy*so*v***YF**************MMO**********UTUUUUUU*fjJXoa*66578999668BB9EFADFBDDCCC97B5MFIJFH************************q********DS**y*vzry******jvrRbPUqaMOMLOMMXUTizqi**XnZ*uZq*gduMkdgaagoagceed**d*VPPVJQQQROMEEFGGFGFFMZJIOTSxuzU*XnPZT*UcghbSbkZYXaabiecif6-FNVVP331444****c************-************************vypwyqttvvvvvrsvstr**w*****a7************55NIFIFFGQRTRVO*u*ddcegdLSTPPWTYjRUXWULZKUYyl*************t***KJJGIKKIJRmut*xyyyy*****XXXRSSRQRQHGGGAAQZYYOPQQBB9AAAAA*ChGFGEI-KIIIPLFVURELSGMLBBChs*fdy**yyGiP 3566pqR1pOEJepXPKRLOSWRcQfUKKHKIKVRPFRNOLMMJGHONSaZVjfMQQIMLLMJHFABC4BC8HGKCD3AGBGGEHM6B-LTCKLIQHEGKGALNMIAYx**gpfyouUMQMSdS*yK*J**z4*Z*SPOHqMP*dGUPMIjHE*MiaV*P**V*ZnG*kw*fs*aLUNP*TTOMZ****N**UQ*u**g ------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------ DISOP:02AL 244-245| PSIPRED cEEEEEEEEEEccEEEEccccEEEcccEEEEEEccccccHHHHHHHHHHcccccccEEEEccEEcccccccHHHHHHHHHHccEEEEcHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHccccHHcccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHccEEEEEEccEEEEEccHHHHHHccccHHHHHHHHHHccc //