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Clostridium perfringens str. 13 (cper0)
Gene : CPE2102
DDBJ      :CPE2102      probable ATP-dependent RNA helicase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  175/915 : Eukaryota  196/199 : Viruses  0/175   --->[See Alignment]
b.1.18c.37.1
:585 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   151->444 2p6rA PDBj 6e-14 33.7 %
:RPS:PDB   114->405 1cu1A PDBj 2e-21 14.3 %
:RPS:SCOP  149->252 1a1vA1  c.37.1.14 * 4e-05 11.7 %
:RPS:SCOP  317->403 1c7sA1  b.1.18.2 * 6e-12 7.1 %
:HMM:SCOP  14->246 1rifA_ c.37.1.23 * 3.4e-08 19.1 %
:HMM:SCOP  135->424 2bmfA2 c.37.1.14 * 6.1e-32 23.4 %
:RPS:PFM   326->369 PF00271 * Helicase_C 2e-05 36.4 %
:HMM:PFM   323->405 PF00271 * Helicase_C 3.3e-16 35.1 74/78  
:HMM:PFM   538->585 PF12513 * SUV3_C 1.8e-16 35.4 48/49  
:HMM:PFM   145->239 PF05707 * Zot 0.00014 26.1 88/193  
:HMM:PFM   287->352 PF00490 * ALAD 0.00026 18.2 66/324  
:BLT:SWISS 59->444 SUV3_SACDO 2e-66 39.1 %
:BLT:SWISS 514->581 GCST_ALKMQ 6e-04 35.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81808.1 GT:GENE CPE2102 GT:PRODUCT probable ATP-dependent RNA helicase GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2409786..2411543) GB:FROM 2409786 GB:TO 2411543 GB:DIRECTION - GB:GENE CPE2102 GB:PRODUCT probable ATP-dependent RNA helicase GB:NOTE 585 aa, similar to gp:AB028738_1 probable ATP-dependent RNA helicase from Clostridium perfringens (585 aa); 98.1% identity in 585 aa overlap GB:PROTEIN_ID BAB81808.1 LENGTH 585 SQ:AASEQ MKKNAAQREYKKLSGQINQIENIVRHSKAGALFEHESTLRKKILQLKEMKDQGLKGYESLYDRYEELLEAVGKRILENYNKKNDTNFDFYEVLRNNYNVFLNSGIMTLLVKHHIPELISKEFDEKFPANPKDEYLHTRRLKRKFYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNEGVKCNLLTGEEEILFEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNAKNILKEIIEDCGDDYEIIEYHRDIPLIVEDESFHPKNVQEGDALVLFSKKKVLQMAEQYSQMGIKCSIIYGDLPPEVRKKQYEEFITGKNKILITTDAIGMGVNLPIKRIIFLSISKFDGEQMRELTSQEVKQIAGRAGRKGIYDTGYVATYRDNKEFIEERLEEEDISIKRAVLGPSDAILEIDNLPLNEKLALWSTKKCEVPYYRKMDISEYLIILERLKSYKLLEEIQWELLKIPFDISKDDLMNQFLNFVDQLFINDQEELFKPQCYSGTLYDLETYYQMVNMYYSFSKRFNLNFDLEWIENERLTVSEEINNILMRI GT:EXON 1|1-585:0| BL:SWS:NREP 2 BL:SWS:REP 59->444|SUV3_SACDO|2e-66|39.1|379/737| BL:SWS:REP 514->581|GCST_ALKMQ|6e-04|35.3|68/369| SEG 420->429|efieerleee| BL:PDB:NREP 1 BL:PDB:REP 151->444|2p6rA|6e-14|33.7|276/683| RP:PDB:NREP 1 RP:PDB:REP 114->405|1cu1A|2e-21|14.3|287/645| RP:PFM:NREP 1 RP:PFM:REP 326->369|PF00271|2e-05|36.4|44/76|Helicase_C| HM:PFM:NREP 4 HM:PFM:REP 323->405|PF00271|3.3e-16|35.1|74/78|Helicase_C| HM:PFM:REP 538->585|PF12513|1.8e-16|35.4|48/49|SUV3_C| HM:PFM:REP 145->239|PF05707|0.00014|26.1|88/193|Zot| HM:PFM:REP 287->352|PF00490|0.00026|18.2|66/324|ALAD| GO:PFM:NREP 3 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 2 RP:SCP:REP 149->252|1a1vA1|4e-05|11.7|103/136|c.37.1.14| RP:SCP:REP 317->403|1c7sA1|6e-12|7.1|84/105|b.1.18.2| HM:SCP:REP 14->246|1rifA_|3.4e-08|19.1|230/282|c.37.1.23|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 135->424|2bmfA2|6.1e-32|23.4|269/0|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 632 OP:NHOMOORG 373 OP:PATTERN ---------------1--------------------------1------------------------- ----1111111111-------1----------11111111-1111111111-111111--111111111111111111---1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111111111-----111-1----111---------------------2111-----111111111111111-11111-11-22122122111-111111111111111111111-111112222222212221121-----------------------------111111--------------------------------------1---------------111-----------1--------------------------111122--1-------------------1---1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------1------------------------------------------------------1- 1211222162212222211222322222211112221212112212221111112211111132222211222123222222221222-1222222222223233422-441111322122222221329I2-3332122311221211121142212335823423342222213112O1112322531432222222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 438 STR:RPRED 74.9 SQ:SECSTR #################################################################################################################EEEEEEHHHHHHHHHcccccccccccccccEEEEEccccccTTTHHHHHHHTTTcEEEEEccHHHHHHHHHHHHHHTccccEEEcccccccccccEEEEEHHHHHHHTcccTTcccEEEEETTcTcccHHHHHHHHHHHHHTTTTTccEEEEEEcccTTccccccTTEEEEEccccccETTEEEcGGGTcccEEEEEccHHHHHHHHHHHHTTccEEEEcTTcccccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEcccEEEcccccccEEEEEEEEccHHHHHHHccEEEccccccHH##########ccTTTTccHHHHHHHHHTTccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHTTTccccccHHHHHHHHHHTcccccccTTccccccc######################## DISOP:02AL 1-11, 73-86| PSIPRED cccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHcccEEEEEEccEEEEEccccEEEEcHHHHHHHHcccEEEEcHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEcHHHHHcccccccEEEEEccccccccccccccHHHHHHHHccccccccccEEEEEEEEccHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcc //