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Clostridium perfringens str. 13 (cper0)
Gene : CPE2123
DDBJ      :CPE2123      probable membrane-bound protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  293/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
:437 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   331->375 2pokB PDBj 7e-04 28.9 %
:RPS:PFM   96->250 PF03816 * LytR_cpsA_psr 3e-25 44.4 %
:HMM:PFM   96->249 PF03816 * LytR_cpsA_psr 6.8e-41 42.7 143/148  
:BLT:SWISS 71->324 LYAT_OCEIH 3e-29 35.7 %
:BLT:SWISS 245->437 Y075_MYCGE 7e-04 25.4 %
:PROS 193->201|PS00482|DIHYDROOROTASE_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81829.1 GT:GENE CPE2123 GT:PRODUCT probable membrane-bound protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2435436..2436749) GB:FROM 2435436 GB:TO 2436749 GB:DIRECTION - GB:GENE CPE2123 GB:PRODUCT probable membrane-bound protein GB:NOTE 437 aa, similar to pir:S75661 membrane-bound protein lytR from Synechocystis sp. (strain PCC 6803) (463 aa); 31% identity in 358 aa overlap. 1 putative transmembrane region was found by PSORT membrane-bound protein GB:PROTEIN_ID BAB81829.1 LENGTH 437 SQ:AASEQ MGNEENRFEKRQDKKNINKKSLVKRIILGALAFILIFFISIFGYFYFKYGSFLGEVFNIVKDVKQDVIKVEEPINVLLLGMDIGDTSDVSNKDAKRTDTIILANFDPITKEAKLISIPRDTRVKIGGKSQKINAAYPIGGEKLVKQLVGNILGVKVDYVVKVDYEGFRGIIDAIGGIDMYIEQDMNYDDPGQDLHIHFNKGETVHLDGKKAEEFFRWRKNNDGTGLANGDVDRIKNQQKFINAVIDKVLSVSTITKIDSIAEILNKNIETNIPLDVTVAYGLKGLETDKNNIKMMTLPGEGKYVGNVSYYIPDEKATKELRSQLNSSNLSGRKNVIPSAARGDLSIKVLNCTKINGLAANVQKQLNENGYDKVDVGNGDPREKSEILIKDESSRAFMENDLKIDNIKKGISSKYDGNGNYDVVILLGKDFKNFGEMK GT:EXON 1|1-437:0| BL:SWS:NREP 2 BL:SWS:REP 71->324|LYAT_OCEIH|3e-29|35.7|235/320| BL:SWS:REP 245->437|Y075_MYCGE|7e-04|25.4|181/100| PROS 193->201|PS00482|DIHYDROOROTASE_1|PDOC00401| TM:NTM 1 TM:REGION 26->48| SEG 26->54|iilgalafiliffisifgyfyfkygsflg| SEG 59->70|ivkdvkqdvikv| SEG 154->164|vkvdyvvkvdy| BL:PDB:NREP 1 BL:PDB:REP 331->375|2pokB|7e-04|28.9|45/456| RP:PFM:NREP 1 RP:PFM:REP 96->250|PF03816|3e-25|44.4|144/145|LytR_cpsA_psr| HM:PFM:NREP 1 HM:PFM:REP 96->249|PF03816|6.8e-41|42.7|143/148|LytR_cpsA_psr| OP:NHOMO 670 OP:NHOMOORG 295 OP:PATTERN -------------------------------------------------------------------- ----2122111212211----1111------111112433243524322-1-11122---31314345543122211122322--------------------------1--------------------------12222---1112212221122--111122212222-1-----1----2121111-11366666666666666632554366622242543333335333333333333333333343532422423333311333323411112221111311212222222221111111111111221222222224231222222212122--2443413113211122111211121132--1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------2111111111--- -------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 45 STR:RPRED 10.3 SQ:SECSTR ##########################################################################################################################################################################################################################################################################################################################################ccccEEccEEEEEEEEEEcTTccHHHHHHHHHHHHHHTTcTTcEE############################################################## DISOP:02AL 1-22, 53-72, 85-94, 329-342, 407-416, 435-437| PSIPRED ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEEEEccccEEEEEEEcHHHEEEEccccccccHHHccccHHHHHHHHHHHHcccccEEEEEEHHHHHHHHHHcccEEEccccccccccccccEEEEEEcccEEEEcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHEEEcccHHHHHHHHHHHHHcccccEEEEEEEEEEEEcccEEEEEEcHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHccccEEEccccccccccEEEEEccccHHHHHHHHcccccccEEEEEccccccccEEEEEccccccccccc //