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Clostridium perfringens str. 13 (cper0)
Gene : CPE2126
DDBJ      :CPE2126      conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  308/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.68.4
:100 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->96 1rq8A PDBj 9e-24 50.0 %
:RPS:SCOP  1->96 1rq8A  d.68.4.1 * 1e-27 50.0 %
:HMM:SCOP  1->96 1rq8A_ d.68.4.1 * 2.9e-26 45.2 %
:RPS:PFM   2->85 PF01985 * CRS1_YhbY 5e-11 41.7 %
:HMM:PFM   2->85 PF01985 * CRS1_YhbY 2.3e-28 42.9 84/84  
:BLT:SWISS 1->96 YQEI_BACSU 3e-22 46.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB81832.1 GT:GENE CPE2126 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2437954..2438256) GB:FROM 2437954 GB:TO 2438256 GB:DIRECTION - GB:GENE CPE2126 GB:PRODUCT conserved hypothetical protein GB:NOTE 100 aa, similar to sp:YQEI_BACSU HYPOTHETICAL 10.8 KDA PROTEIN IN AROD-COMER INTERGENIC REGION from Bacillus subtilis (96 aa); 46.9% identity in 96 aa overlap GB:PROTEIN_ID BAB81832.1 LENGTH 100 SQ:AASEQ MITTKQRAYLRGLGAKLTPIFQIGKNGIEDNFLKQVDDALEAREILKINVLENSGLETREASNFICERLGCEGVQSIGNKIVLYRASKNNPKIELPKKGK GT:EXON 1|1-100:0| BL:SWS:NREP 1 BL:SWS:REP 1->96|YQEI_BACSU|3e-22|46.9|96/96| BL:PDB:NREP 1 BL:PDB:REP 1->96|1rq8A|9e-24|50.0|96/96| RP:PFM:NREP 1 RP:PFM:REP 2->85|PF01985|5e-11|41.7|84/84|CRS1_YhbY| HM:PFM:NREP 1 HM:PFM:REP 2->85|PF01985|2.3e-28|42.9|84/84|CRS1_YhbY| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF01985|IPR001890| RP:SCP:NREP 1 RP:SCP:REP 1->96|1rq8A|1e-27|50.0|96/96|d.68.4.1| HM:SCP:REP 1->96|1rq8A_|2.9e-26|45.2|93/0|d.68.4.1|1/1|YhbY-like| OP:NHOMO 308 OP:NHOMOORG 308 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------1111111------------------------------------------------------------------------------------------------------------------11111111111111111111111111111111111111111-11111111111111111111-1-11-1---111111111-111111111111111111111111111111111111111111111111111111111111111111--11111-111111--11----1------1-11-------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------1-1111-----------------------------1-111-11--1--11----------------------------11111--1111111111111--11-11111------1------11111-11111111-11-111111111111111111111111--11111111111111111111111111-1--------------1--------------111111111111111---------------------------------------11111111111111---1-11111-----1--------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 97 STR:RPRED 97.0 SQ:SECSTR cccHHHHHHHHHHTTccccccEEccccccHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHTEEEEEEETTEEEEEEcccccccccccc### DISOP:02AL 1-2, 90-93, 97-100| PSIPRED cccHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHccEEEEccccEEEEEEccccccccccccccc //